Protein–RNA interactions for Protein: Q9NPC8

SIX2, Homeobox protein SIX2, humanhuman

Predictions only

Length 291 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX2Q9NPC8 NDUFS8-201ENST00000313468 791 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX2Q9NPC8 NUDT4P1-201ENST00000322209 1206 ntAPPRIS P1 BASIC17■□□□□ 0.31
SIX2Q9NPC8 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
SIX2Q9NPC8 MRPL55-208ENST00000366734 990 ntAPPRIS P1 TSL 2 BASIC17■□□□□ 0.31
SIX2Q9NPC8 MRPL55-217ENST00000366746 565 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX2Q9NPC8 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
SIX2Q9NPC8 IZUMO4-201ENST00000395296 869 ntTSL 2 BASIC17■□□□□ 0.31
SIX2Q9NPC8 RPL37AP1-201ENST00000412502 279 ntBASIC17■□□□□ 0.31
SIX2Q9NPC8 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC17■□□□□ 0.31
SIX2Q9NPC8 AC063976.1-201ENST00000457890 381 ntTSL 2 BASIC17■□□□□ 0.31
SIX2Q9NPC8 LINC00628-201ENST00000628516 1289 ntBASIC17■□□□□ 0.31
SIX2Q9NPC8 AC110491.3-201ENST00000631985 460 ntTSL 2 BASIC17■□□□□ 0.31
SIX2Q9NPC8 ANKRD24-202ENST00000318934 3906 ntAPPRIS P2 TSL 5 BASIC17■□□□□ 0.31
SIX2Q9NPC8 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX2Q9NPC8 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC17■□□□□ 0.31
SIX2Q9NPC8 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX2Q9NPC8 CEP70-213ENST00000489254 1811 ntAPPRIS ALT2 TSL 2 BASIC17■□□□□ 0.31
SIX2Q9NPC8 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX2Q9NPC8 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC17■□□□□ 0.31
SIX2Q9NPC8 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX2Q9NPC8 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX2Q9NPC8 CACNA1B-203ENST00000371355 9647 ntAPPRIS ALT2 TSL 5 BASIC17■□□□□ 0.31
SIX2Q9NPC8 GPS1-227ENST00000623761 1943 ntTSL 2 BASIC17■□□□□ 0.31
SIX2Q9NPC8 RTN4RL1-201ENST00000331238 3625 ntAPPRIS P1 TSL 1 (best) BASIC17■□□□□ 0.31
SIX2Q9NPC8 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 ADGRB2-201ENST00000373655 5400 ntAPPRIS P4 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 AC023824.1-201ENST00000562945 2975 ntBASIC16.99■□□□□ 0.31
SIX2Q9NPC8 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 DPP6-205ENST00000427557 2388 ntTSL 2 BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 EIF4E-201ENST00000280892 1097 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 SPDYE7P-202ENST00000420373 878 ntBASIC16.99■□□□□ 0.31
SIX2Q9NPC8 AC004865.2-202ENST00000444348 852 ntTSL 3 BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 FXYD6-209ENST00000530956 579 ntAPPRIS P2 TSL 2 BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 DAD1-205ENST00000543337 501 ntTSL 3 BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 CBR3-AS1-216ENST00000624883 564 ntTSL 3 BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 NIPAL4-201ENST00000311946 3274 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 MTFMT-201ENST00000220058 2734 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 AC126365.1-201ENST00000578585 1514 ntBASIC16.99■□□□□ 0.31
SIX2Q9NPC8 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 LINC01136-203ENST00000457348 2539 ntTSL 2 BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 SLC2A4-202ENST00000424875 1852 ntTSL 2 BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
SIX2Q9NPC8 PSMD14-201ENST00000409682 1954 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 SEMA3B-212ENST00000616701 2958 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 ACE-204ENST00000428043 5120 ntTSL 2 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 MDFIC-201ENST00000257724 4598 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 MAP1LC3B-201ENST00000268607 2688 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 IQCF3-205ENST00000456080 1685 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 BRF1-205ENST00000440513 2368 ntTSL 2 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 EBI3-201ENST00000221847 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 ASB12-201ENST00000362002 1289 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 AL135791.1-201ENST00000429214 826 ntTSL 5 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 FAM72B-205ENST00000471903 676 ntTSL 5 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 PP7080-203ENST00000510604 859 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 PRR29-209ENST00000582540 967 ntTSL 2 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 LINC01775-201ENST00000587826 371 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 AL589739.1-201ENST00000607720 493 ntBASIC16.98■□□□□ 0.31
SIX2Q9NPC8 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 SMAD6-201ENST00000288840 3835 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
SIX2Q9NPC8 MST1L-201ENST00000442552 2185 ntBASIC16.98■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms