Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 GLS2-217ENST00000623608 2518 ntTSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC17.42■□□□□ 0.38
TRAIPQ9BWF2 PLXNB3-201ENST00000361971 6146 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 FUK-207ENST00000571514 3054 ntTSL 2 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 MINDY1-201ENST00000312210 2400 ntTSL 2 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 LHCGR-203ENST00000403273 1921 ntTSL 5 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 INTS11-247ENST00000540437 2629 ntTSL 2 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 SHMT2-232ENST00000557487 1918 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 CACNA1G-202ENST00000354983 8138 ntAPPRIS ALT2 TSL 5 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 NRG1-202ENST00000356819 5931 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 PKD1P5-201ENST00000532415 10291 ntBASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 OR8S1-201ENST00000310194 1080 ntBASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 NSL1-201ENST00000366976 722 ntTSL 2 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 TNFRSF14-202ENST00000409119 896 ntAPPRIS ALT2 TSL 3 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 AC011495.1-201ENST00000498085 584 ntBASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 TIMM17BP1-201ENST00000545713 516 ntBASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 POLE2-203ENST00000553805 496 ntTSL 2 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 RARRES2P5-201ENST00000564013 466 ntBASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 AC093726.1-201ENST00000608064 963 ntBASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 AC007431.3-201ENST00000623221 587 ntBASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 FEZF1-AS1-202ENST00000428449 2653 ntTSL 2 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 RNF34-202ENST00000392464 1722 ntTSL 5 BASIC17.41■□□□□ 0.38
TRAIPQ9BWF2 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 ZNF84-208ENST00000539354 3237 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 PGR-209ENST00000617858 2816 ntTSL 5 BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 SLC17A7-204ENST00000600601 2237 ntTSL 2 BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 TAP2-202ENST00000374899 2497 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 TVP23B-201ENST00000307767 2064 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 REXO1L8P-201ENST00000604378 1897 ntBASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 KL-201ENST00000380099 5006 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 CCDC181-206ENST00000491570 1652 ntTSL 2 BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 VPS16-203ENST00000380469 2318 ntTSL 2 BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 MIOX-203ENST00000395733 1021 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 AL133456.1-201ENST00000415655 577 ntTSL 4 BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 U91328.1-201ENST00000437528 223 ntBASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 FADS2-205ENST00000517839 469 ntTSL 3 BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 AC025442.1-201ENST00000521596 481 ntTSL 2 BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 AC105339.1-202ENST00000559535 1283 ntTSL 5 BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 WASH4P-201ENST00000564273 1246 ntBASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 AC079336.2-201ENST00000578408 927 ntTSL 3 BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 TMEM261P1-201ENST00000604899 340 ntBASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 AL391069.4-201ENST00000609583 481 ntBASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 KCNJ12-201ENST00000331718 2198 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 CDKN2B-AS1-208ENST00000580576 2175 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 CYB5R2-204ENST00000524790 1338 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 WDR81-204ENST00000419248 3315 ntTSL 2 BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 PKDREJ-201ENST00000253255 7693 ntAPPRIS P1 BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 ZDHHC13-201ENST00000399351 2283 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
TRAIPQ9BWF2 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.39■□□□□ 0.38
TRAIPQ9BWF2 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TRAIPQ9BWF2 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TRAIPQ9BWF2 BTC-201ENST00000395743 2816 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TRAIPQ9BWF2 CSAD-208ENST00000444623 2122 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TRAIPQ9BWF2 RGS6-210ENST00000553530 5685 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.38
TRAIPQ9BWF2 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
TRAIPQ9BWF2 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.38
TRAIPQ9BWF2 PEA15-202ENST00000368076 2694 ntTSL 2 BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 HIST1H2AC-203ENST00000602637 1462 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 PEX6-202ENST00000304611 3478 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 CLIP4-201ENST00000320081 4293 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
TRAIPQ9BWF2 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 47.8 ms