Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 ZSCAN30-208ENST00000592278 731 ntTSL 4 BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 TOMM40-207ENST00000592434 3415 ntAPPRIS ALT2 TSL 2 BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 AC233724.13-201ENST00000598383 410 ntBASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 AC024909.3-201ENST00000611513 2257 ntBASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 ZNF514-202ENST00000411425 2755 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
PAAF1Q9BRP4 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 FZD1-201ENST00000287934 6963 ntAPPRIS P1 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 MUC1-228ENST00000620103 1811 ntAPPRIS ALT2 TSL 5 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 OGDH-204ENST00000443864 1744 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 CYP2AB1P-202ENST00000454440 1456 ntBASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 HACD3-202ENST00000442729 1332 ntTSL 2 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 ATP6V0B-201ENST00000236067 944 ntTSL 2 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 NCR1-201ENST00000291890 1155 ntAPPRIS P3 TSL 5 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 NCR1-202ENST00000338835 973 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 NCR1-203ENST00000350790 739 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 PRAF2-201ENST00000376386 801 ntTSL 2 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 FAM221A-203ENST00000409653 761 ntTSL 5 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 FAM221A-204ENST00000409994 1136 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 SOCS2P1-201ENST00000417727 557 ntBASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 AL606534.2-205ENST00000437691 346 ntTSL 5 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 AC234783.1-201ENST00000441761 496 ntBASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 LIMS3-203ENST00000480744 1197 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 ATP6V0B-211ENST00000498664 825 ntTSL 2 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 AC009133.2-201ENST00000566537 547 ntTSL 4 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 AP001005.4-201ENST00000572530 387 ntTSL 3 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 C19orf53-206ENST00000593274 491 ntTSL 2 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 AC005252.2-201ENST00000624630 1141 ntBASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 MMEL1-201ENST00000378412 2849 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 CAAP1-201ENST00000333916 2791 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 KLF10-202ENST00000395884 3659 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 AC112504.1-201ENST00000623415 1841 ntBASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 PCDHA8-202ENST00000531613 5260 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 TBP-206ENST00000540980 1701 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
PAAF1Q9BRP4 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 MAP3K9-201ENST00000381250 4025 ntAPPRIS ALT2 TSL 5 BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 ADRB3-201ENST00000345060 2950 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 TMC3-AS1-203ENST00000559781 2195 ntTSL 3 BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 FDFT1-202ENST00000443614 1393 ntTSL 2 BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 IRS2-201ENST00000375856 8138 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 SMIM25-203ENST00000425497 2010 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 KLC1-206ENST00000389744 3250 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 APOA1-204ENST00000375323 1088 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 BCRP2-202ENST00000447763 634 ntBASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 AL353747.3-201ENST00000454185 579 ntTSL 3 BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 BCRP6-201ENST00000510112 632 ntBASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 BCRP7-201ENST00000511549 544 ntBASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 MTX3-202ENST00000512528 1280 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 LINC01089-209ENST00000542933 1220 ntTSL 3 BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 PIGL-212ENST00000581006 554 ntTSL 4 BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 RAB11B-202ENST00000594216 894 ntTSL 2 BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 NR2C1-203ENST00000393101 1822 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 CCDC71L-202ENST00000523505 4232 ntAPPRIS P2 BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 TK1-203ENST00000588734 1681 ntTSL 2 BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 AL603832.2-201ENST00000566195 2125 ntBASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 BAZ1A-203ENST00000382422 5775 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 TP73-204ENST00000378280 2062 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
PAAF1Q9BRP4 SHOX2-202ENST00000425436 1513 ntTSL 5 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 EID3-201ENST00000527879 1467 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 PIPOX-201ENST00000323372 2414 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
PAAF1Q9BRP4 TCEA2-203ENST00000361317 1427 ntTSL 2 BASIC16.8■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 40.9 ms