Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
NUP88Q99567 ALDOA-226ENST00000569798 1499 ntTSL 2 BASIC18.6■□□□□ 0.57
NUP88Q99567 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NUP88Q99567 AL391825.1-201ENST00000457671 1364 ntBASIC18.6■□□□□ 0.57
NUP88Q99567 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC18.6■□□□□ 0.57
NUP88Q99567 NRXN1-204ENST00000401669 5870 ntAPPRIS ALT1 TSL 5 BASIC18.6■□□□□ 0.57
NUP88Q99567 MOB3B-201ENST00000262244 6454 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NUP88Q99567 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC18.6■□□□□ 0.57
NUP88Q99567 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
NUP88Q99567 NXT2-202ENST00000372103 1085 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NUP88Q99567 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NUP88Q99567 AC087499.6-201ENST00000411576 835 ntBASIC18.6■□□□□ 0.57
NUP88Q99567 INE1-201ENST00000456273 945 ntBASIC18.6■□□□□ 0.57
NUP88Q99567 IGFBP2-204ENST00000456764 846 ntTSL 3 BASIC18.6■□□□□ 0.57
NUP88Q99567 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC18.6■□□□□ 0.57
NUP88Q99567 EEF1AKMT3-204ENST00000551420 836 ntTSL 2 BASIC18.6■□□□□ 0.57
NUP88Q99567 SUOX-214ENST00000551841 906 ntTSL 3 BASIC18.6■□□□□ 0.57
NUP88Q99567 AC243562.2-201ENST00000561247 970 ntBASIC18.6■□□□□ 0.57
NUP88Q99567 AC092337.1-201ENST00000568699 1129 ntBASIC18.6■□□□□ 0.57
NUP88Q99567 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC18.6■□□□□ 0.57
NUP88Q99567 IGHV3-72-202ENST00000621503 303 ntBASIC18.6■□□□□ 0.57
NUP88Q99567 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC18.6■□□□□ 0.57
NUP88Q99567 COPS7B-206ENST00000410017 2051 ntTSL 3 BASIC18.6■□□□□ 0.57
NUP88Q99567 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC18.6■□□□□ 0.57
NUP88Q99567 ELFN2-208ENST00000430883 1970 ntTSL 2 BASIC18.6■□□□□ 0.57
NUP88Q99567 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC18.6■□□□□ 0.57
NUP88Q99567 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC18.6■□□□□ 0.57
NUP88Q99567 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC18.6■□□□□ 0.57
NUP88Q99567 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC18.6■□□□□ 0.57
NUP88Q99567 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC18.6■□□□□ 0.57
NUP88Q99567 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NUP88Q99567 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.6■□□□□ 0.57
NUP88Q99567 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC18.6■□□□□ 0.57
NUP88Q99567 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC18.6■□□□□ 0.57
NUP88Q99567 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC18.6■□□□□ 0.57
NUP88Q99567 ZC3H7B-201ENST00000352645 5909 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 TM6SF2-201ENST00000389363 1505 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 PGAP3-201ENST00000300658 2737 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC18.59■□□□□ 0.57
NUP88Q99567 CU639417.3-201ENST00000624240 1404 ntBASIC18.59■□□□□ 0.57
NUP88Q99567 DDC-202ENST00000380984 1366 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 PCNP-201ENST00000265260 2342 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 SSR4-204ENST00000370087 745 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
NUP88Q99567 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC18.59■□□□□ 0.57
NUP88Q99567 ARL6IP4-207ENST00000426960 910 ntAPPRIS ALT2 TSL 3 BASIC18.59■□□□□ 0.57
NUP88Q99567 TMEM247-204ENST00000434431 680 ntAPPRIS P1 TSL 5 BASIC18.59■□□□□ 0.57
NUP88Q99567 HEBP2-202ENST00000448741 661 ntTSL 5 BASIC18.59■□□□□ 0.57
NUP88Q99567 AC245100.5-201ENST00000452108 331 ntBASIC18.59■□□□□ 0.57
NUP88Q99567 NAA50-208ENST00000497255 789 ntTSL 5 BASIC18.59■□□□□ 0.57
NUP88Q99567 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC18.59■□□□□ 0.57
NUP88Q99567 CD4-210ENST00000541982 1187 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 LINC02298-201ENST00000546968 965 ntTSL 5 BASIC18.59■□□□□ 0.57
NUP88Q99567 GABARAPL2-202ENST00000563744 791 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 AC087741.1-202ENST00000573346 801 ntTSL 3 BASIC18.59■□□□□ 0.57
NUP88Q99567 AC016727.1-204ENST00000578974 420 ntTSL 3 BASIC18.59■□□□□ 0.57
NUP88Q99567 AC132938.2-201ENST00000579188 680 ntBASIC18.59■□□□□ 0.57
NUP88Q99567 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC18.59■□□□□ 0.57
NUP88Q99567 AP001033.1-201ENST00000584509 466 ntTSL 3 BASIC18.59■□□□□ 0.57
NUP88Q99567 CTBP2P3-201ENST00000585629 1255 ntBASIC18.59■□□□□ 0.57
NUP88Q99567 AC011499.1-201ENST00000586012 581 ntAPPRIS P1 TSL 3 BASIC18.59■□□□□ 0.57
NUP88Q99567 AL591163.1-201ENST00000641757 987 ntBASIC18.59■□□□□ 0.57
NUP88Q99567 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 LRP11-201ENST00000239367 3260 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC18.59■□□□□ 0.57
NUP88Q99567 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 DCAF5-201ENST00000341516 5953 ntAPPRIS P3 TSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 SMARCA4-201ENST00000344626 5392 ntTSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 TNKS1BP1-201ENST00000358252 5795 ntAPPRIS P2 TSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC18.59■□□□□ 0.57
NUP88Q99567 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC18.59■□□□□ 0.57
NUP88Q99567 DUSP14-204ENST00000613659 1559 ntAPPRIS P1 TSL 2 BASIC18.59■□□□□ 0.57
NUP88Q99567 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC18.59■□□□□ 0.57
NUP88Q99567 CHTF18-220ENST00000631357 3555 ntAPPRIS ALT2 TSL 5 BASIC18.58■□□□□ 0.57
NUP88Q99567 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
NUP88Q99567 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC18.58■□□□□ 0.57
NUP88Q99567 SLC25A45-202ENST00000398802 2286 ntAPPRIS P1 TSL 5 BASIC18.58■□□□□ 0.57
NUP88Q99567 ABR-203ENST00000536794 2213 ntTSL 2 BASIC18.58■□□□□ 0.57
NUP88Q99567 STUM-201ENST00000366788 7705 ntAPPRIS P2 TSL 5 BASIC18.58■□□□□ 0.57
NUP88Q99567 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC18.58■□□□□ 0.57
NUP88Q99567 CALM3-212ENST00000599839 1355 ntTSL 1 (best) BASIC18.58■□□□□ 0.57
NUP88Q99567 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
NUP88Q99567 LINC00487-201ENST00000382045 2131 ntTSL 2 BASIC18.58■□□□□ 0.57
NUP88Q99567 H6PD-201ENST00000377403 9146 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
NUP88Q99567 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.57
NUP88Q99567 AL513523.2-202ENST00000427283 2040 ntBASIC18.58■□□□□ 0.56
NUP88Q99567 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC18.58■□□□□ 0.56
NUP88Q99567 PIR-201ENST00000380420 1282 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NUP88Q99567 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC18.58■□□□□ 0.56
NUP88Q99567 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC18.58■□□□□ 0.56
NUP88Q99567 AC074338.1-201ENST00000416825 156 ntBASIC18.58■□□□□ 0.56
NUP88Q99567 AC244107.1-201ENST00000442033 332 ntBASIC18.58■□□□□ 0.56
Retrieved 100 of 98,524 protein–RNA pairs in 61.6 ms