Protein–RNA interactions for Protein: Q96M19

LINC00477, Putative transmembrane protein encoded by LINC00477, humanhuman

Predictions only

Length 166 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00477Q96M19 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 NFE2-201ENST00000312156 1658 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.97□□□□□ -0.49
LINC00477Q96M19 MEGF11-203ENST00000409699 6163 ntAPPRIS P1 TSL 5 BASIC11.97□□□□□ -0.49
LINC00477Q96M19 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 AL669831.1-201ENST00000506640 6432 ntTSL 5 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 AKAP1-202ENST00000337714 3970 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00477Q96M19 DNAJB9-201ENST00000249356 2715 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00477Q96M19 STAT1-202ENST00000392322 2716 ntAPPRIS ALT1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00477Q96M19 SUN2-203ENST00000406622 2725 ntAPPRIS P1 TSL 2 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 HAP1-204ENST00000393939 5683 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00477Q96M19 AC105250.1-201ENST00000509378 2057 ntBASIC11.96□□□□□ -0.49
LINC00477Q96M19 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00477Q96M19 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 TFAP2A-201ENST00000319516 2035 ntTSL 5 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00477Q96M19 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00477Q96M19 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 AC104109.2-201ENST00000602919 1418 ntBASIC11.96□□□□□ -0.49
LINC00477Q96M19 AC022613.1-201ENST00000536835 2530 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00477Q96M19 SUSD4-204ENST00000366878 3025 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00477Q96M19 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00477Q96M19 NACC1-201ENST00000292431 4445 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00477Q96M19 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00477Q96M19 NPB-201ENST00000333383 704 ntAPPRIS P2 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00477Q96M19 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00477Q96M19 AC004987.2-201ENST00000395959 1148 ntBASIC11.96□□□□□ -0.49
LINC00477Q96M19 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 AHSA1-202ENST00000535854 1173 ntTSL 2 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 KRT126P-201ENST00000549467 1181 ntBASIC11.96□□□□□ -0.49
LINC00477Q96M19 AC034105.1-201ENST00000563488 319 ntBASIC11.96□□□□□ -0.49
LINC00477Q96M19 AP002472.1-201ENST00000577490 586 ntBASIC11.96□□□□□ -0.49
LINC00477Q96M19 MIEN1-205ENST00000577810 806 ntTSL 3 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00477Q96M19 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 PXDNL-201ENST00000356297 4805 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00477Q96M19 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.49
LINC00477Q96M19 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC11.96□□□□□ -0.49
LINC00477Q96M19 RHPN1-201ENST00000289013 3683 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
LINC00477Q96M19 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC11.96□□□□□ -0.5
LINC00477Q96M19 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC11.96□□□□□ -0.5
LINC00477Q96M19 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC11.96□□□□□ -0.5
LINC00477Q96M19 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC11.96□□□□□ -0.5
LINC00477Q96M19 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC11.96□□□□□ -0.5
LINC00477Q96M19 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC11.96□□□□□ -0.5
LINC00477Q96M19 DBET-201ENST00000630918 3363 ntBASIC11.96□□□□□ -0.5
LINC00477Q96M19 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC11.96□□□□□ -0.5
LINC00477Q96M19 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC11.96□□□□□ -0.5
LINC00477Q96M19 SLC18A1-207ENST00000519026 1980 ntTSL 5 BASIC11.96□□□□□ -0.5
LINC00477Q96M19 ZBTB45P2-201ENST00000452245 1531 ntBASIC11.96□□□□□ -0.5
LINC00477Q96M19 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC11.96□□□□□ -0.5
LINC00477Q96M19 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
LINC00477Q96M19 SPAG9-201ENST00000262013 8273 ntTSL 1 (best) BASIC11.96□□□□□ -0.5
LINC00477Q96M19 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 SLC30A5-209ENST00000621204 3999 ntTSL 5 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 AC144831.1-201ENST00000573312 2656 ntBASIC11.95□□□□□ -0.5
LINC00477Q96M19 KIAA1468-202ENST00000398130 6178 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 AC006486.2-201ENST00000624246 2199 ntBASIC11.95□□□□□ -0.5
LINC00477Q96M19 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 CCDC68-204ENST00000591504 4132 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 DEGS2-201ENST00000305631 4352 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 KIF17-201ENST00000247986 3969 ntAPPRIS P3 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 BSG-215ENST00000618006 1329 ntTSL 2 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 LDLR-204ENST00000545707 2429 ntTSL 2 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 ZNF620-202ENST00000418905 2022 ntTSL 2 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 ISCA2-201ENST00000298818 851 ntTSL 5 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 TPM2-201ENST00000329305 1018 ntAPPRIS ALT1 TSL 2 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 CBR1-202ENST00000399191 838 ntTSL 3 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 HNRNPA1P28-201ENST00000424481 961 ntBASIC11.95□□□□□ -0.5
LINC00477Q96M19 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 AL121672.1-201ENST00000439423 1181 ntTSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 FAM86C2P-203ENST00000528684 1004 ntBASIC11.95□□□□□ -0.5
LINC00477Q96M19 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 AC131009.1-201ENST00000539078 426 ntTSL 5 BASIC11.95□□□□□ -0.5
LINC00477Q96M19 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC11.95□□□□□ -0.5
LINC00477Q96M19 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC11.95□□□□□ -0.5
Retrieved 100 of 98,524 protein–RNA pairs in 40.3 ms