Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 AL353997.2-201ENST00000579352 4955 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 RAD51D-218ENST00000590016 1528 ntTSL 2 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 NFIC-201ENST00000341919 1573 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 INTS14-209ENST00000567744 2419 ntTSL 2 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 ACOT9-201ENST00000336430 1675 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 PHACTR3-204ENST00000371015 2728 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 GTF2H2C-201ENST00000380729 1803 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 NUP50-202ENST00000396096 1895 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 REXO1L8P-201ENST00000604378 1897 ntBASIC14.8□□□□□ -0.04
BEST3Q8N1M1 GPER1-206ENST00000617001 1900 ntTSL 5 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 TXNRD2-214ENST00000491939 2238 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 C9orf24-204ENST00000379127 596 ntTSL 3 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 MAP9-202ENST00000379248 1165 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 UFL1-AS1-201ENST00000430796 548 ntTSL 3 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 AC243562.3-201ENST00000559866 1212 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 PDLIM3-213ENST00000629667 1016 ntTSL 5 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 SLC37A4-217ENST00000545985 2606 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 ATP6AP2-233ENST00000638153 1303 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 VARS2-212ENST00000542001 4064 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 AC132872.4-202ENST00000622924 2756 ntBASIC14.8□□□□□ -0.04
BEST3Q8N1M1 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 TNIP1-202ENST00000389378 2935 ntAPPRIS ALT2 TSL 2 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 C21orf58-201ENST00000291691 2975 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 RNPS1-223ENST00000568631 1792 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 FBXL12-206ENST00000588922 1843 ntTSL 2 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 AP001122.1-202ENST00000501648 1916 ntTSL 2 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC14.8□□□□□ -0.04
BEST3Q8N1M1 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 WDR81-206ENST00000446363 2968 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 CORO2B-201ENST00000261861 3569 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 CORO2B-204ENST00000566799 3566 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 SRPK1-204ENST00000373825 4592 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 SLITRK2-202ENST00000370490 7672 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 TAAR5-201ENST00000258034 1014 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 TSC22D4-201ENST00000300181 2383 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 VCX2-201ENST00000317103 815 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 CCDC28A-201ENST00000332797 1496 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 PCBP4-202ENST00000355852 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 BCAN-202ENST00000361588 2563 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 HDAC8-206ENST00000373571 2133 ntTSL 5 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 GRAP-202ENST00000395635 834 ntTSL 2 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 BLCAP-202ENST00000397131 633 ntAPPRIS P1 TSL 3 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 BLCAP-203ENST00000397134 566 ntAPPRIS P1 TSL 4 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 OSM-203ENST00000403463 464 ntTSL 3 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 AL353779.1-201ENST00000434793 351 ntBASIC14.79□□□□□ -0.04
BEST3Q8N1M1 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 GAPDHP21-201ENST00000450301 1010 ntBASIC14.79□□□□□ -0.04
BEST3Q8N1M1 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 UHMK1-202ENST00000489294 8478 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 RPL10P19-202ENST00000520582 722 ntTSL 3 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC14.79□□□□□ -0.04
BEST3Q8N1M1 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms