Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ASIC2-201ENST00000225823 3443 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 CIDEC-201ENST00000336832 1277 ntAPPRIS P3 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 AL133267.1-201ENST00000398220 340 ntBASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 KRTAP19-9P-201ENST00000421795 191 ntBASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 CIDEC-203ENST00000423850 1036 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 TMEM107-203ENST00000431792 455 ntTSL 3 BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 CIDEC-206ENST00000455015 1123 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 C14orf132-202ENST00000553782 536 ntTSL 4 BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 CMC2-214ENST00000565925 640 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 AC092634.5-202ENST00000587736 928 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 ECM1P1-201ENST00000604092 1279 ntBASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 SLC39A6-202ENST00000440549 1657 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 PDHB-206ENST00000474765 1503 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 HSFX2-201ENST00000598963 1365 ntAPPRIS P1 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 WIPF1-201ENST00000272746 3028 ntAPPRIS ALT2 TSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 IKBKE-204ENST00000584998 2487 ntTSL 1 (best) BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 PRKAG1-217ENST00000552212 1497 ntTSL 2 BASIC19.12■□□□□ 0.65
CCDC88AQ3V6T2 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 LBH-202ENST00000401506 485 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 EVA1A-204ENST00000410071 777 ntAPPRIS P2 TSL 3 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 AC016700.1-201ENST00000429424 312 ntBASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 HILPDA-202ENST00000435296 785 ntAPPRIS P1 TSL 2 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 AL136361.1-201ENST00000435429 506 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 ARMCX3-AS1-201ENST00000454228 490 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 KRT18P25-201ENST00000508931 1278 ntBASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 AC022217.1-201ENST00000521069 738 ntBASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 AP007216.2-201ENST00000562094 299 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 AC104982.3-201ENST00000581995 514 ntBASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 MIR7845-201ENST00000618396 99 ntBASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 AC079336.7-201ENST00000623428 1078 ntBASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 DDX42-202ENST00000389924 3939 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 ADAMTS19-205ENST00000638972 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 LINC00599-203ENST00000519461 2922 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 KLHDC8A-205ENST00000539253 2931 ntAPPRIS P1 TSL 5 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 APP-202ENST00000348990 3355 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 SLFNL1-201ENST00000302946 1951 ntAPPRIS P3 TSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 POM121L10P-201ENST00000436994 1285 ntBASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 AP003171.2-201ENST00000528208 925 ntBASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 AC243964.2-201ENST00000590796 829 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 AC026740.1-201ENST00000607068 791 ntBASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 AC018635.2-201ENST00000608625 364 ntBASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 LINC01002-220ENST00000632790 449 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 SP100-205ENST00000409824 1802 ntTSL 5 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 PSMG4-209ENST00000473000 4603 ntTSL 2 BASIC19.11■□□□□ 0.65
CCDC88AQ3V6T2 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 SNRPD3-201ENST00000215829 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 CACNG5-201ENST00000307139 926 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 NOL4L-202ENST00000326071 701 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 KCNAB2-207ENST00000378111 822 ntTSL 3 BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 AC013355.1-201ENST00000562625 723 ntBASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 CCDC144NL-AS1-209ENST00000577860 884 ntTSL 5 BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 SLC3A2-203ENST00000377890 2161 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 REXO1L1P-202ENST00000608646 1974 ntBASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 PEX10-201ENST00000288774 2871 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
CCDC88AQ3V6T2 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 AL355334.1-201ENST00000417713 215 ntBASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 MRPL48-210ENST00000542303 661 ntTSL 3 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 AC023310.1-201ENST00000554836 735 ntBASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 HSD3B7-201ENST00000262520 2200 ntTSL 2 BASIC19.09■□□□□ 0.65
CCDC88AQ3V6T2 RAB11FIP4-211ENST00000621161 8628 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms