Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 FAM118B-206ENST00000529731 1028 ntTSL 5 BASIC14.26□□□□□ -0.13
CLRN1P58418 PPP1R14B-203ENST00000542235 920 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN1P58418 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC14.26□□□□□ -0.13
CLRN1P58418 PYCR1-207ENST00000577756 1144 ntTSL 2 BASIC14.26□□□□□ -0.13
CLRN1P58418 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.26□□□□□ -0.13
CLRN1P58418 AC243571.2-201ENST00000615265 628 ntTSL 3 BASIC14.26□□□□□ -0.13
CLRN1P58418 LINC00466-208ENST00000635218 1217 ntTSL 5 BASIC14.26□□□□□ -0.13
CLRN1P58418 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN1P58418 RAI2-206ENST00000545871 2421 ntAPPRIS P1 TSL 4 BASIC14.26□□□□□ -0.13
CLRN1P58418 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC14.26□□□□□ -0.13
CLRN1P58418 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN1P58418 KIAA1211-206ENST00000541073 4117 ntAPPRIS ALT2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN1P58418 FBXO41-201ENST00000295133 6928 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN1P58418 ZNF425-201ENST00000378061 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN1P58418 BNIP3P1-202ENST00000550043 1585 ntBASIC14.26□□□□□ -0.13
CLRN1P58418 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN1P58418 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN1P58418 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN1P58418 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.26□□□□□ -0.13
CLRN1P58418 HLA-DQB2-231ENST00000435145 2026 ntBASIC14.25□□□□□ -0.13
CLRN1P58418 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC14.25□□□□□ -0.13
CLRN1P58418 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CLRN1P58418 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
CLRN1P58418 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.25□□□□□ -0.13
CLRN1P58418 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC14.25□□□□□ -0.13
CLRN1P58418 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN1P58418 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC14.25□□□□□ -0.13
CLRN1P58418 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC14.25□□□□□ -0.13
CLRN1P58418 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN1P58418 CCDC85A-201ENST00000407595 3982 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN1P58418 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CLRN1P58418 ZNF593-201ENST00000270812 698 ntTSL 2 BASIC14.25□□□□□ -0.13
CLRN1P58418 YIF1B-201ENST00000329420 964 ntTSL 3 BASIC14.25□□□□□ -0.13
CLRN1P58418 LCN2-203ENST00000373017 848 ntAPPRIS P2 TSL 5 BASIC14.25□□□□□ -0.13
CLRN1P58418 KRT18P13-201ENST00000400056 1290 ntBASIC14.25□□□□□ -0.13
CLRN1P58418 FAM58DP-201ENST00000428076 619 ntBASIC14.25□□□□□ -0.13
CLRN1P58418 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN1P58418 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC14.25□□□□□ -0.13
CLRN1P58418 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.25□□□□□ -0.13
CLRN1P58418 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.25□□□□□ -0.13
CLRN1P58418 ZNF576-206ENST00000533118 867 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CLRN1P58418 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC14.25□□□□□ -0.13
CLRN1P58418 UGGT2-213ENST00000638479 1010 ntTSL 5 BASIC14.25□□□□□ -0.13
CLRN1P58418 MYO15B-237ENST00000642007 4893 ntBASIC14.25□□□□□ -0.13
CLRN1P58418 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC14.25□□□□□ -0.13
CLRN1P58418 TBC1D24-205ENST00000567020 6673 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN1P58418 NAF1-201ENST00000274054 1907 ntAPPRIS P3 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN1P58418 POC1B-202ENST00000393179 3096 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN1P58418 PDPK1-202ENST00000342085 7241 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN1P58418 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN1P58418 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC14.25□□□□□ -0.13
CLRN1P58418 ASIC1-202ENST00000447966 3778 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
CLRN1P58418 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.25□□□□□ -0.13
CLRN1P58418 ADRA2A-201ENST00000280155 3745 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
CLRN1P58418 FAM131A-203ENST00000383847 1483 ntAPPRIS P1 TSL 2 BASIC14.25□□□□□ -0.13
CLRN1P58418 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 CTBP1-209ENST00000510568 4250 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.24□□□□□ -0.13
CLRN1P58418 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 AMZ2P1-202ENST00000430983 3425 ntTSL 2 BASIC14.24□□□□□ -0.13
CLRN1P58418 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 PPP3CA-207ENST00000512215 4007 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC14.24□□□□□ -0.13
CLRN1P58418 MYB-209ENST00000442647 3304 ntAPPRIS ALT1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 HYMAI-201ENST00000635591 3347 ntBASIC14.24□□□□□ -0.13
CLRN1P58418 SNPH-202ENST00000381873 4995 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 OPCML-202ENST00000374778 1302 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 TMEM225B-202ENST00000431679 1314 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
CLRN1P58418 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 EGFR-206ENST00000454757 5464 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 IER5-201ENST00000367577 4188 ntAPPRIS P1 BASIC14.24□□□□□ -0.13
CLRN1P58418 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 TMEM205-201ENST00000354882 1034 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 PRUNE2-202ENST00000376713 1069 ntTSL 5 BASIC14.24□□□□□ -0.13
CLRN1P58418 AP001062.3-201ENST00000422357 704 ntTSL 2 BASIC14.24□□□□□ -0.13
CLRN1P58418 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC14.24□□□□□ -0.13
CLRN1P58418 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC14.24□□□□□ -0.13
CLRN1P58418 AC108047.1-201ENST00000457407 404 ntTSL 2 BASIC14.24□□□□□ -0.13
CLRN1P58418 AC023141.5-201ENST00000458585 616 ntBASIC14.24□□□□□ -0.13
CLRN1P58418 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.24□□□□□ -0.13
CLRN1P58418 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
CLRN1P58418 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CLRN1P58418 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC14.24□□□□□ -0.13
CLRN1P58418 SNHG9-202ENST00000564014 471 ntBASIC14.24□□□□□ -0.13
CLRN1P58418 TMEM205-205ENST00000586590 677 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
CLRN1P58418 TMEM205-207ENST00000586956 1003 ntAPPRIS P1 TSL 2 BASIC14.24□□□□□ -0.13
CLRN1P58418 TVP23A-210ENST00000612195 1298 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 AC003101.2-201ENST00000612557 442 ntBASIC14.24□□□□□ -0.13
CLRN1P58418 AC018529.1-201ENST00000613063 361 ntBASIC14.24□□□□□ -0.13
CLRN1P58418 SLC6A8-201ENST00000253122 3763 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 CDH7-203ENST00000536984 3766 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
CLRN1P58418 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
CLRN1P58418 AL162727.3-201ENST00000635661 2787 ntBASIC14.24□□□□□ -0.13
Retrieved 100 of 98,524 protein–RNA pairs in 43.4 ms