Protein–RNA interactions for Protein: P54868

HMGCS2, Hydroxymethylglutaryl-CoA synthase, mitochondrial, humanhuman

Predictions only

Length 508 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS2P54868 DRGX-202ENST00000434016 955 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
HMGCS2P54868 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC18.19■□□□□ 0.5
HMGCS2P54868 AC080188.2-201ENST00000508985 552 ntTSL 4 BASIC18.19■□□□□ 0.5
HMGCS2P54868 PLEKHB1-206ENST00000535129 1049 ntAPPRIS ALT1 TSL 2 BASIC18.19■□□□□ 0.5
HMGCS2P54868 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC18.19■□□□□ 0.5
HMGCS2P54868 UEVLD-212ENST00000541984 755 ntTSL 3 BASIC18.19■□□□□ 0.5
HMGCS2P54868 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC18.19■□□□□ 0.5
HMGCS2P54868 EMC4-209ENST00000559421 497 ntTSL 2 BASIC18.19■□□□□ 0.5
HMGCS2P54868 TRAPPC2L-206ENST00000564365 1060 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS2P54868 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC18.19■□□□□ 0.5
HMGCS2P54868 SNX9-201ENST00000392185 4198 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS2P54868 PGR-209ENST00000617858 2816 ntTSL 5 BASIC18.19■□□□□ 0.5
HMGCS2P54868 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC18.19■□□□□ 0.5
HMGCS2P54868 TSNARE1-201ENST00000307180 1907 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
HMGCS2P54868 ZFP91-201ENST00000316059 5220 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS2P54868 MYO1B-204ENST00000392318 5082 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS2P54868 PRPF31-201ENST00000321030 2126 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS2P54868 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC18.19■□□□□ 0.5
HMGCS2P54868 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
HMGCS2P54868 TCF7-204ENST00000395029 3330 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
HMGCS2P54868 FARP1-242ENST00000627049 5103 ntTSL 5 BASIC18.18■□□□□ 0.5
HMGCS2P54868 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HMGCS2P54868 CACNA1G-206ENST00000416767 4899 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HMGCS2P54868 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
HMGCS2P54868 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
HMGCS2P54868 CSNK1A1L-201ENST00000379800 2406 ntAPPRIS P1 BASIC18.18■□□□□ 0.5
HMGCS2P54868 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGCS2P54868 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC18.18■□□□□ 0.5
HMGCS2P54868 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC18.18■□□□□ 0.5
HMGCS2P54868 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGCS2P54868 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HMGCS2P54868 CACNA1A-215ENST00000635727 7536 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
HMGCS2P54868 RUFY2-202ENST00000342616 983 ntTSL 2 BASIC18.18■□□□□ 0.5
HMGCS2P54868 AL133267.1-201ENST00000398220 340 ntBASIC18.18■□□□□ 0.5
HMGCS2P54868 SETD4-205ENST00000399208 1165 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HMGCS2P54868 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC18.18■□□□□ 0.5
HMGCS2P54868 AL355994.3-201ENST00000437156 466 ntTSL 2 BASIC18.18■□□□□ 0.5
HMGCS2P54868 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGCS2P54868 DUX4L45-201ENST00000566406 1057 ntBASIC18.18■□□□□ 0.5
HMGCS2P54868 AC025279.2-201ENST00000569730 653 ntBASIC18.18■□□□□ 0.5
HMGCS2P54868 AC103810.3-201ENST00000583567 96 ntBASIC18.18■□□□□ 0.5
HMGCS2P54868 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC18.18■□□□□ 0.5
HMGCS2P54868 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HMGCS2P54868 MARCH1-203ENST00000503008 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGCS2P54868 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC18.18■□□□□ 0.5
HMGCS2P54868 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGCS2P54868 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC18.18■□□□□ 0.5
HMGCS2P54868 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGCS2P54868 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGCS2P54868 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC18.18■□□□□ 0.5
HMGCS2P54868 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGCS2P54868 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGCS2P54868 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
HMGCS2P54868 MAGI3-203ENST00000369615 6508 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
HMGCS2P54868 GNA13-201ENST00000439174 4922 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
HMGCS2P54868 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC18.18■□□□□ 0.5
HMGCS2P54868 ACBD3-201ENST00000366812 3573 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 MAP6-202ENST00000434603 4329 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC18.17■□□□□ 0.5
HMGCS2P54868 FADS2-202ENST00000278840 3630 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 UBE3B-201ENST00000340074 1448 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 SLC25A46-201ENST00000355943 2385 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC18.17■□□□□ 0.5
HMGCS2P54868 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
HMGCS2P54868 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC18.17■□□□□ 0.5
HMGCS2P54868 LARGE-AS1-202ENST00000424291 1065 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 ZNF767P-206ENST00000513792 565 ntBASIC18.17■□□□□ 0.5
HMGCS2P54868 AP002748.3-205ENST00000525142 567 ntTSL 3 BASIC18.17■□□□□ 0.5
HMGCS2P54868 AP002748.3-203ENST00000533502 581 ntTSL 3 BASIC18.17■□□□□ 0.5
HMGCS2P54868 RAB40B-202ENST00000538809 704 ntTSL 2 BASIC18.17■□□□□ 0.5
HMGCS2P54868 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC18.17■□□□□ 0.5
HMGCS2P54868 MIR3615-201ENST00000581999 87 ntBASIC18.17■□□□□ 0.5
HMGCS2P54868 AC091271.1-201ENST00000611877 1162 ntBASIC18.17■□□□□ 0.5
HMGCS2P54868 EVX2-201ENST00000308618 4203 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
HMGCS2P54868 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
HMGCS2P54868 ASXL1-202ENST00000375687 7031 ntAPPRIS P2 TSL 5 BASIC18.17■□□□□ 0.5
HMGCS2P54868 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 MRTO4-201ENST00000330263 2315 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
HMGCS2P54868 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 KCNQ1-201ENST00000155840 3245 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC18.17■□□□□ 0.5
HMGCS2P54868 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC18.17■□□□□ 0.5
HMGCS2P54868 PSMC3-212ENST00000602866 1373 ntAPPRIS ALT1 TSL 1 (best) BASIC18.17■□□□□ 0.5
HMGCS2P54868 AL365277.1-202ENST00000331856 2241 ntTSL 2 BASIC18.17■□□□□ 0.5
HMGCS2P54868 RAB15-203ENST00000533601 3515 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGCS2P54868 PTGDR-201ENST00000306051 2942 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGCS2P54868 SIGLEC12-203ENST00000598614 1434 ntTSL 5 BASIC18.16■□□□□ 0.5
HMGCS2P54868 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGCS2P54868 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGCS2P54868 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC18.16■□□□□ 0.5
HMGCS2P54868 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
HMGCS2P54868 AC132872.2-201ENST00000581303 2368 ntTSL 5 BASIC18.16■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 61.8 ms