Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC16.68■□□□□ 0.26
COL4A4P53420 FTLP10-202ENST00000505798 471 ntBASIC16.68■□□□□ 0.26
COL4A4P53420 AC023310.1-201ENST00000554836 735 ntBASIC16.68■□□□□ 0.26
COL4A4P53420 SLIRP-210ENST00000557431 725 ntTSL 2 BASIC16.68■□□□□ 0.26
COL4A4P53420 AC008805.2-201ENST00000590069 435 ntTSL 5 BASIC16.68■□□□□ 0.26
COL4A4P53420 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC16.68■□□□□ 0.26
COL4A4P53420 AC010323.1-201ENST00000598884 580 ntAPPRIS P1 TSL 4 BASIC16.68■□□□□ 0.26
COL4A4P53420 AC093813.1-201ENST00000605066 256 ntBASIC16.68■□□□□ 0.26
COL4A4P53420 DDX42-216ENST00000583590 4148 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
COL4A4P53420 AC133785.1-201ENST00000429282 2824 ntTSL 2 BASIC16.68■□□□□ 0.26
COL4A4P53420 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL4A4P53420 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
COL4A4P53420 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC16.67■□□□□ 0.26
COL4A4P53420 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC16.67■□□□□ 0.26
COL4A4P53420 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A4P53420 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A4P53420 ARHGAP22-201ENST00000249601 2751 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A4P53420 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A4P53420 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A4P53420 TEX261-201ENST00000272438 3441 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A4P53420 RPL39L-201ENST00000296277 756 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A4P53420 TNFAIP8L2-201ENST00000368910 1178 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A4P53420 MPRIPP1-201ENST00000452433 1089 ntBASIC16.67■□□□□ 0.26
COL4A4P53420 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC16.67■□□□□ 0.26
COL4A4P53420 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC16.67■□□□□ 0.26
COL4A4P53420 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC16.67■□□□□ 0.26
COL4A4P53420 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A4P53420 RERG-205ENST00000537647 935 ntTSL 2 BASIC16.67■□□□□ 0.26
COL4A4P53420 FGFR3P5-201ENST00000564496 886 ntBASIC16.67■□□□□ 0.26
COL4A4P53420 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC16.67■□□□□ 0.26
COL4A4P53420 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A4P53420 NR2C2-201ENST00000323373 2406 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A4P53420 FAM174B-201ENST00000327355 2792 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A4P53420 DRG2-201ENST00000225729 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A4P53420 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
COL4A4P53420 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC16.67■□□□□ 0.26
COL4A4P53420 BMP4-206ENST00000559087 1708 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A4P53420 HNRNPD-201ENST00000313899 3033 ntAPPRIS P4 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A4P53420 AC022188.1-201ENST00000620960 1664 ntBASIC16.66■□□□□ 0.26
COL4A4P53420 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A4P53420 CARD14-202ENST00000570421 2607 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A4P53420 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
COL4A4P53420 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC16.66■□□□□ 0.26
COL4A4P53420 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A4P53420 HIST3H3-201ENST00000366696 481 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
COL4A4P53420 CLIC1-206ENST00000375779 1127 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
COL4A4P53420 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A4P53420 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A4P53420 C1RL-212ENST00000545337 813 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A4P53420 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC16.66■□□□□ 0.26
COL4A4P53420 MIR5572-201ENST00000583188 137 ntBASIC16.66■□□□□ 0.26
COL4A4P53420 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC16.66■□□□□ 0.26
COL4A4P53420 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC16.66■□□□□ 0.26
COL4A4P53420 AL358473.2-201ENST00000610411 556 ntTSL 4 BASIC16.66■□□□□ 0.26
COL4A4P53420 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
COL4A4P53420 NUCB1-202ENST00000407032 2158 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
COL4A4P53420 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.66■□□□□ 0.26
COL4A4P53420 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A4P53420 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A4P53420 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
COL4A4P53420 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC16.66■□□□□ 0.26
COL4A4P53420 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC16.66■□□□□ 0.26
COL4A4P53420 TRMT44-201ENST00000389737 2799 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
COL4A4P53420 NELFA-216ENST00000542778 2465 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A4P53420 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.66■□□□□ 0.26
COL4A4P53420 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC16.66■□□□□ 0.26
COL4A4P53420 BST2-201ENST00000252593 1019 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A4P53420 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A4P53420 LIMS4-201ENST00000413601 1215 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A4P53420 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC16.65■□□□□ 0.26
COL4A4P53420 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC16.65■□□□□ 0.26
COL4A4P53420 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC16.65■□□□□ 0.26
COL4A4P53420 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.65■□□□□ 0.26
COL4A4P53420 RN7SL574P-201ENST00000581512 297 ntBASIC16.65■□□□□ 0.26
COL4A4P53420 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC16.65■□□□□ 0.26
COL4A4P53420 KLK3-207ENST00000595952 969 ntTSL 3 BASIC16.65■□□□□ 0.26
COL4A4P53420 STPG3-204ENST00000611378 1015 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A4P53420 AL021997.3-201ENST00000621053 557 ntAPPRIS P1 TSL 4 BASIC16.65■□□□□ 0.26
COL4A4P53420 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A4P53420 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.65■□□□□ 0.26
COL4A4P53420 DOC2GP-204ENST00000639052 2548 ntBASIC16.65■□□□□ 0.26
COL4A4P53420 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.65■□□□□ 0.26
COL4A4P53420 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
COL4A4P53420 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A4P53420 AL365203.3-201ENST00000609742 2057 ntBASIC16.65■□□□□ 0.26
COL4A4P53420 MLLT6-210ENST00000620609 2714 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A4P53420 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A4P53420 DCP1B-202ENST00000535873 2231 ntTSL 2 BASIC16.65■□□□□ 0.26
COL4A4P53420 ZCCHC2-201ENST00000269499 5959 ntAPPRIS P2 TSL 5 BASIC16.65■□□□□ 0.26
COL4A4P53420 SPATA33-210ENST00000611218 1546 ntAPPRIS ALT2 TSL 2 BASIC16.65■□□□□ 0.26
COL4A4P53420 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC16.65■□□□□ 0.26
COL4A4P53420 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A4P53420 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.65■□□□□ 0.26
COL4A4P53420 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A4P53420 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.65■□□□□ 0.26
COL4A4P53420 SSPN-201ENST00000242729 2788 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A4P53420 HIST2H2AA3-201ENST00000369159 549 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
COL4A4P53420 CDC25B-204ENST00000379598 2990 ntTSL 2 BASIC16.65■□□□□ 0.26
COL4A4P53420 TXNRD3NB-202ENST00000383572 1131 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
COL4A4P53420 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 54.1 ms