Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 KRT8P49-201ENST00000604166 1432 ntBASIC13.08□□□□□ -0.32
CDX1P47902 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC13.08□□□□□ -0.32
CDX1P47902 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CDX1P47902 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CDX1P47902 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CDX1P47902 CD82-202ENST00000342935 967 ntTSL 5 BASIC13.08□□□□□ -0.32
CDX1P47902 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
CDX1P47902 PHYHD1-203ENST00000372592 2133 ntAPPRIS P1 TSL 2 BASIC13.08□□□□□ -0.32
CDX1P47902 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CDX1P47902 AC254562.1-201ENST00000417586 456 ntBASIC13.08□□□□□ -0.32
CDX1P47902 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC13.08□□□□□ -0.32
CDX1P47902 SLC22A18-206ENST00000449793 1225 ntTSL 5 BASIC13.08□□□□□ -0.32
CDX1P47902 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC13.08□□□□□ -0.32
CDX1P47902 THTPA-204ENST00000554970 569 ntTSL 4 BASIC13.08□□□□□ -0.32
CDX1P47902 THTPA-206ENST00000556015 535 ntTSL 3 BASIC13.08□□□□□ -0.32
CDX1P47902 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC13.08□□□□□ -0.32
CDX1P47902 AP002449.1-201ENST00000588211 474 ntTSL 2 BASIC13.08□□□□□ -0.32
CDX1P47902 AC008761.1-201ENST00000595363 217 ntTSL 5 BASIC13.08□□□□□ -0.32
CDX1P47902 AP001160.2-201ENST00000596071 487 ntBASIC13.08□□□□□ -0.32
CDX1P47902 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC13.08□□□□□ -0.32
CDX1P47902 CITED2-204ENST00000618718 901 ntTSL 2 BASIC13.08□□□□□ -0.32
CDX1P47902 AC091812.2-201ENST00000619081 385 ntBASIC13.08□□□□□ -0.32
CDX1P47902 WDR4-201ENST00000330317 1471 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CDX1P47902 NPM2-209ENST00000521157 1484 ntAPPRIS P2 TSL 5 BASIC13.08□□□□□ -0.32
CDX1P47902 TCP10-210ENST00000617120 2182 ntAPPRIS ALT2 TSL 5 BASIC13.08□□□□□ -0.32
CDX1P47902 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CDX1P47902 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CDX1P47902 HNRNPUL1-205ENST00000593587 2725 ntTSL 2 BASIC13.08□□□□□ -0.32
CDX1P47902 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CDX1P47902 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC13.08□□□□□ -0.32
CDX1P47902 GCK-202ENST00000345378 2421 ntTSL 2 BASIC13.08□□□□□ -0.32
CDX1P47902 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 HTR3E-201ENST00000335304 1912 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 RAD51D-201ENST00000335858 1353 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 C14orf93-205ENST00000397379 1949 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 NFASC-205ENST00000403080 2462 ntTSL 2 BASIC13.07□□□□□ -0.32
CDX1P47902 CPEB1-211ENST00000615198 2112 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 STX3-203ENST00000529177 1571 ntTSL 2 BASIC13.07□□□□□ -0.32
CDX1P47902 DNAJC21-202ENST00000382021 6208 ntTSL 2 BASIC13.07□□□□□ -0.32
CDX1P47902 RBPJ-204ENST00000348160 1752 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC13.07□□□□□ -0.32
CDX1P47902 NKAIN4-202ENST00000370313 1421 ntTSL 3 BASIC13.07□□□□□ -0.32
CDX1P47902 PPIL6-207ENST00000521072 4128 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 TRPV4-201ENST00000261740 3233 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 SOX7-201ENST00000304501 3216 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 GPX7-201ENST00000361314 1228 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 YWHAZ-203ENST00000395951 964 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
CDX1P47902 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC13.07□□□□□ -0.32
CDX1P47902 RPS8P6-201ENST00000426177 609 ntBASIC13.07□□□□□ -0.32
CDX1P47902 UCHL1-204ENST00000503431 917 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
CDX1P47902 CFL1-202ENST00000524553 860 ntTSL 2 BASIC13.07□□□□□ -0.32
CDX1P47902 ATP6V0D1-203ENST00000540149 1262 ntTSL 2 BASIC13.07□□□□□ -0.32
CDX1P47902 JPH4-203ENST00000544177 1124 ntTSL 2 BASIC13.07□□□□□ -0.32
CDX1P47902 SNHG9-202ENST00000564014 471 ntBASIC13.07□□□□□ -0.32
CDX1P47902 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 FXYD1-208ENST00000589209 428 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
CDX1P47902 FXYD1-211ENST00000612146 690 ntAPPRIS P1 TSL 3 BASIC13.07□□□□□ -0.32
CDX1P47902 TMEM265-201ENST00000615541 995 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 CSNK2A1-203ENST00000400217 1451 ntTSL 2 BASIC13.07□□□□□ -0.32
CDX1P47902 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC13.07□□□□□ -0.32
CDX1P47902 FTSJ1-202ENST00000348411 1892 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 SMAP1-202ENST00000370452 2491 ntTSL 2 BASIC13.07□□□□□ -0.32
CDX1P47902 WDR20-205ENST00000424963 2695 ntTSL 5 BASIC13.07□□□□□ -0.32
CDX1P47902 TMEM30B-202ENST00000555868 4471 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
CDX1P47902 GNE-202ENST00000396594 5298 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 SCN3B-201ENST00000299333 5665 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 AL603832.2-201ENST00000566195 2125 ntBASIC13.07□□□□□ -0.32
CDX1P47902 SBSN-201ENST00000452271 1945 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 STC1-202ENST00000524323 1748 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 GMPPA-202ENST00000341142 1524 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
CDX1P47902 TUBB8P12-201ENST00000308911 1335 ntBASIC13.07□□□□□ -0.32
CDX1P47902 NR1H3-204ENST00000407404 1330 ntTSL 5 BASIC13.07□□□□□ -0.32
CDX1P47902 TUBB7P-202ENST00000428444 1305 ntBASIC13.07□□□□□ -0.32
CDX1P47902 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 TUBB8P7-204ENST00000567960 1332 ntBASIC13.07□□□□□ -0.32
CDX1P47902 PRRT2-202ENST00000358758 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 MINK1-201ENST00000347992 4863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC13.07□□□□□ -0.32
CDX1P47902 CETN1-201ENST00000327228 1758 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
CDX1P47902 HARS-204ENST00000438307 1789 ntTSL 2 BASIC13.07□□□□□ -0.32
CDX1P47902 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 CD244-202ENST00000368033 1360 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 CAMK1D-204ENST00000619168 8153 ntAPPRIS P4 TSL 1 (best) BASIC13.07□□□□□ -0.32
CDX1P47902 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC13.06□□□□□ -0.32
CDX1P47902 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
CDX1P47902 LINC01305-201ENST00000420866 3123 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC13.06□□□□□ -0.32
CDX1P47902 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.06□□□□□ -0.32
CDX1P47902 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
CDX1P47902 CR383656.2-201ENST00000548656 2254 ntBASIC13.06□□□□□ -0.32
CDX1P47902 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 RBPMS-201ENST00000287771 2974 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 ZMYM3-204ENST00000373982 1867 ntTSL 5 BASIC13.06□□□□□ -0.32
CDX1P47902 NR4A3-201ENST00000330847 4982 ntAPPRIS P4 TSL 5 BASIC13.06□□□□□ -0.32
CDX1P47902 PRR15-201ENST00000319694 1678 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
CDX1P47902 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
CDX1P47902 SPTLC2-201ENST00000216484 8170 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms