Protein–RNA interactions for Protein: P35398

RORA, Nuclear receptor ROR-alpha, humanhuman

Predictions only

Length 523 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RORAP35398 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RORAP35398 NRXN2-202ENST00000301894 3535 ntTSL 5 BASIC15.12■□□□□ 0.01
RORAP35398 JADE2-202ENST00000361895 3212 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RORAP35398 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RORAP35398 OSGIN1-203ENST00000393306 1940 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RORAP35398 SHISA5-209ENST00000443308 1933 ntTSL 2 BASIC15.12■□□□□ 0.01
RORAP35398 MYCL-203ENST00000397332 3256 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RORAP35398 TBC1D28-201ENST00000345096 2789 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
RORAP35398 AC091980.2-201ENST00000619056 2775 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
RORAP35398 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
RORAP35398 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC15.12■□□□□ 0.01
RORAP35398 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RORAP35398 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
RORAP35398 PRSS48-202ENST00000455694 989 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RORAP35398 AC095060.1-201ENST00000502455 549 ntTSL 4 BASIC15.12■□□□□ 0.01
RORAP35398 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.12■□□□□ 0.01
RORAP35398 AL096870.1-201ENST00000555591 930 ntAPPRIS P1 TSL 4 BASIC15.12■□□□□ 0.01
RORAP35398 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.12■□□□□ 0.01
RORAP35398 WASH4P-201ENST00000564273 1246 ntBASIC15.12■□□□□ 0.01
RORAP35398 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RORAP35398 AC008494.3-201ENST00000606615 944 ntBASIC15.12■□□□□ 0.01
RORAP35398 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC15.12■□□□□ 0.01
RORAP35398 MIR155HG-201ENST00000456917 1600 ntTSL 5 BASIC15.12■□□□□ 0.01
RORAP35398 SFXN1-201ENST00000321442 4231 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RORAP35398 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
RORAP35398 CYP2T1P-202ENST00000641596 2535 ntBASIC15.12■□□□□ 0.01
RORAP35398 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC15.12■□□□□ 0.01
RORAP35398 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RORAP35398 PCDHB19P-201ENST00000570871 2371 ntBASIC15.12■□□□□ 0.01
RORAP35398 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RORAP35398 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
RORAP35398 ITM2C-201ENST00000326407 1888 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
RORAP35398 MEIS3-210ENST00000561096 1883 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
RORAP35398 HNRNPF-204ENST00000443950 2755 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RORAP35398 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC15.12■□□□□ 0.01
RORAP35398 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
RORAP35398 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
RORAP35398 PRMT5-203ENST00000397440 1907 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 SIGLEC10-205ENST00000439889 2126 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 SLC2A6-201ENST00000371897 2301 ntTSL 2 BASIC15.11■□□□□ 0.01
RORAP35398 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC15.11■□□□□ 0.01
RORAP35398 MBD1-204ENST00000347968 3091 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 TMEM150A-203ENST00000409668 1776 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
RORAP35398 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
RORAP35398 KRT8P37-201ENST00000451609 1420 ntBASIC15.11■□□□□ 0.01
RORAP35398 FAM53B-202ENST00000337318 5431 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.11■□□□□ 0.01
RORAP35398 KLHL42-201ENST00000381271 6703 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 ZNF514-201ENST00000295208 3011 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 LCN15-201ENST00000316144 762 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 SLC18B1-202ENST00000367918 472 ntTSL 5 BASIC15.11■□□□□ 0.01
RORAP35398 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC15.11■□□□□ 0.01
RORAP35398 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC15.11■□□□□ 0.01
RORAP35398 AZGP1P1-201ENST00000411909 902 ntBASIC15.11■□□□□ 0.01
RORAP35398 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 PTPA-220ENST00000436883 532 ntTSL 4 BASIC15.11■□□□□ 0.01
RORAP35398 RHOA-206ENST00000454011 889 ntTSL 2 BASIC15.11■□□□□ 0.01
RORAP35398 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC15.11■□□□□ 0.01
RORAP35398 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC15.11■□□□□ 0.01
RORAP35398 SCN4B-204ENST00000529878 566 ntTSL 4 BASIC15.11■□□□□ 0.01
RORAP35398 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC15.11■□□□□ 0.01
RORAP35398 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC15.11■□□□□ 0.01
RORAP35398 CD300LG-205ENST00000586233 942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC15.11■□□□□ 0.01
RORAP35398 AC007431.3-201ENST00000623221 587 ntBASIC15.11■□□□□ 0.01
RORAP35398 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC15.11■□□□□ 0.01
RORAP35398 RBM6-210ENST00000442092 2260 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
RORAP35398 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC15.11■□□□□ 0.01
RORAP35398 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 PTPRN2-201ENST00000389413 4723 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC15.11■□□□□ 0.01
RORAP35398 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
RORAP35398 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 STXBP1-216ENST00000636962 2918 ntTSL 5 BASIC15.1■□□□□ 0.01
RORAP35398 LHFPL2-207ENST00000515007 4680 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 PRSS16-201ENST00000230582 2716 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 MYOC-201ENST00000037502 2095 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 AC004233.2-201ENST00000573315 2062 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
RORAP35398 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
RORAP35398 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
RORAP35398 TRIM39-205ENST00000396551 3249 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
RORAP35398 ABHD18-203ENST00000444616 2129 ntAPPRIS P1 TSL 5 BASIC15.1■□□□□ 0.01
RORAP35398 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
RORAP35398 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
RORAP35398 MFAP2-201ENST00000375534 970 ntAPPRIS P1 TSL 2 BASIC15.1■□□□□ 0.01
RORAP35398 GK-202ENST00000378941 458 ntTSL 3 BASIC15.1■□□□□ 0.01
RORAP35398 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC15.1■□□□□ 0.01
RORAP35398 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms