Protein–RNA interactions for Protein: P22670

RFX1, MHC class II regulatory factor RFX1, humanhuman

Predictions only

Length 979 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX1P22670 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
RFX1P22670 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFX1P22670 CDH15-201ENST00000289746 2847 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFX1P22670 FAM222B-202ENST00000452648 2836 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
RFX1P22670 GPS1-208ENST00000578552 1874 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFX1P22670 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
RFX1P22670 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.33■□□□□ 0.36
RFX1P22670 GPX3-210ENST00000622181 1757 ntAPPRIS ALT1 TSL 5 BASIC17.33■□□□□ 0.36
RFX1P22670 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC17.33■□□□□ 0.36
RFX1P22670 EHD3-201ENST00000322054 4636 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 ZBTB45P2-201ENST00000452245 1531 ntBASIC17.32■□□□□ 0.36
RFX1P22670 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC17.32■□□□□ 0.36
RFX1P22670 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
RFX1P22670 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
RFX1P22670 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.32■□□□□ 0.36
RFX1P22670 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC17.32■□□□□ 0.36
RFX1P22670 CCT6A-201ENST00000275603 2719 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 CCDC84-201ENST00000334418 1202 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 VCX-202ENST00000381059 967 ntAPPRIS P2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 NDUFAF3-203ENST00000395458 808 ntTSL 2 BASIC17.32■□□□□ 0.36
RFX1P22670 AC004987.2-201ENST00000395959 1148 ntBASIC17.32■□□□□ 0.36
RFX1P22670 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 GPR53P-205ENST00000457298 1084 ntBASIC17.32■□□□□ 0.36
RFX1P22670 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC17.32■□□□□ 0.36
RFX1P22670 FKBP11-208ENST00000550765 1030 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC17.32■□□□□ 0.36
RFX1P22670 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC17.32■□□□□ 0.36
RFX1P22670 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 AC073592.8-201ENST00000624126 511 ntBASIC17.32■□□□□ 0.36
RFX1P22670 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC17.32■□□□□ 0.36
RFX1P22670 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 ICMT-201ENST00000343813 4771 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 LONRF3-201ENST00000304778 2989 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 ADD1-205ENST00000398125 4079 ntTSL 5 BASIC17.32■□□□□ 0.36
RFX1P22670 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC17.32■□□□□ 0.36
RFX1P22670 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC17.32■□□□□ 0.36
RFX1P22670 AC132872.4-202ENST00000622924 2756 ntBASIC17.32■□□□□ 0.36
RFX1P22670 PLPPR2-201ENST00000251473 2727 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 MAPT-204ENST00000344290 6816 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
RFX1P22670 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC17.31■□□□□ 0.36
RFX1P22670 EPHA8-201ENST00000166244 4943 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
RFX1P22670 MFSD1-203ENST00000415822 2423 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFX1P22670 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.31■□□□□ 0.36
RFX1P22670 BCAR1-206ENST00000535626 2894 ntTSL 2 BASIC17.31■□□□□ 0.36
RFX1P22670 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFX1P22670 ATP6AP2-217ENST00000636580 2337 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX1P22670 MAGEA12-202ENST00000393869 1761 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
RFX1P22670 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFX1P22670 LINC00668-205ENST00000581571 1748 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFX1P22670 C11orf71-201ENST00000325636 652 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX1P22670 HRCT1-201ENST00000354323 950 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
RFX1P22670 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
RFX1P22670 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX1P22670 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC17.31■□□□□ 0.36
RFX1P22670 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC17.31■□□□□ 0.36
RFX1P22670 COMT-209ENST00000449653 1035 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX1P22670 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC17.31■□□□□ 0.36
RFX1P22670 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFX1P22670 GATD1-206ENST00000526325 756 ntTSL 5 BASIC17.31■□□□□ 0.36
RFX1P22670 MUTYH-237ENST00000531105 501 ntTSL 5 BASIC17.31■□□□□ 0.36
RFX1P22670 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX1P22670 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX1P22670 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC17.31■□□□□ 0.36
RFX1P22670 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC17.31■□□□□ 0.36
RFX1P22670 SSH2-211ENST00000590153 570 ntTSL 4 BASIC17.31■□□□□ 0.36
RFX1P22670 BCRP3-202ENST00000621462 1021 ntTSL 3 BASIC17.31■□□□□ 0.36
RFX1P22670 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC17.31■□□□□ 0.36
RFX1P22670 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFX1P22670 C9orf172-201ENST00000436881 4387 ntAPPRIS P1 BASIC17.31■□□□□ 0.36
RFX1P22670 ARFGAP1-210ENST00000519273 3176 ntTSL 2 BASIC17.31■□□□□ 0.36
RFX1P22670 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX1P22670 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFX1P22670 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX1P22670 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC17.31■□□□□ 0.36
RFX1P22670 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
RFX1P22670 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
RFX1P22670 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFX1P22670 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFX1P22670 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.3■□□□□ 0.36
RFX1P22670 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFX1P22670 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.3■□□□□ 0.36
RFX1P22670 GLUD2-201ENST00000328078 2493 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
RFX1P22670 VSTM2A-204ENST00000407838 3112 ntAPPRIS P1 TSL 3 BASIC17.3■□□□□ 0.36
RFX1P22670 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
RFX1P22670 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RFX1P22670 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RFX1P22670 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC17.3■□□□□ 0.36
RFX1P22670 TEAD3-204ENST00000639578 1308 ntAPPRIS P2 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFX1P22670 RASA4-204ENST00000462172 2634 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
RFX1P22670 AMT-233ENST00000636522 1620 ntTSL 2 BASIC17.3■□□□□ 0.36
RFX1P22670 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC17.3■□□□□ 0.36
RFX1P22670 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
RFX1P22670 HNRNPA3P1-201ENST00000401429 1139 ntBASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms