Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 NHEG1-202ENST00000432330 1357 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGA1P17096 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGA1P17096 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.34■□□□□ 0.21
HMGA1P17096 RABEPK-206ENST00000628863 1537 ntTSL 5 BASIC16.34■□□□□ 0.21
HMGA1P17096 XAF1-201ENST00000346752 1584 ntAPPRIS ALT2 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 HCLS1-202ENST00000428394 1560 ntTSL 2 BASIC16.34■□□□□ 0.21
HMGA1P17096 TSPAN17-209ENST00000515708 2361 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
HMGA1P17096 EWSR1-222ENST00000629659 2446 ntTSL 5 BASIC16.34■□□□□ 0.21
HMGA1P17096 KRT35-201ENST00000246639 1778 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
HMGA1P17096 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.21
HMGA1P17096 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC16.33■□□□□ 0.21
HMGA1P17096 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC16.33■□□□□ 0.21
HMGA1P17096 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGA1P17096 SUPT20HL2-201ENST00000486479 2409 ntBASIC16.33■□□□□ 0.2
HMGA1P17096 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGA1P17096 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGA1P17096 LBX2-201ENST00000341396 886 ntTSL 3 BASIC16.33■□□□□ 0.2
HMGA1P17096 AC092933.1-201ENST00000393644 945 ntBASIC16.33■□□□□ 0.2
HMGA1P17096 BAATP1-201ENST00000412284 1225 ntBASIC16.33■□□□□ 0.2
HMGA1P17096 LINC01939-201ENST00000445279 694 ntTSL 5 BASIC16.33■□□□□ 0.2
HMGA1P17096 AC012441.1-201ENST00000446669 685 ntBASIC16.33■□□□□ 0.2
HMGA1P17096 KRT223P-202ENST00000449164 1292 ntBASIC16.33■□□□□ 0.2
HMGA1P17096 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.33■□□□□ 0.2
HMGA1P17096 AC104989.1-201ENST00000519711 778 ntBASIC16.33■□□□□ 0.2
HMGA1P17096 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC16.33■□□□□ 0.2
HMGA1P17096 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC16.33■□□□□ 0.2
HMGA1P17096 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
HMGA1P17096 AC093813.1-201ENST00000605066 256 ntBASIC16.33■□□□□ 0.2
HMGA1P17096 METTL26-214ENST00000614890 801 ntTSL 3 BASIC16.33■□□□□ 0.2
HMGA1P17096 DHPS-201ENST00000210060 1363 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGA1P17096 CTSB-219ENST00000530640 1389 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
HMGA1P17096 DOK4-201ENST00000340099 2772 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGA1P17096 KLK6-203ENST00000391808 1478 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGA1P17096 PPP1R1B-205ENST00000579000 1466 ntTSL 5 BASIC16.33■□□□□ 0.2
HMGA1P17096 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGA1P17096 ZNF281-203ENST00000367353 3080 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGA1P17096 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGA1P17096 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGA1P17096 SLC27A1-201ENST00000252595 3594 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGA1P17096 SLC9A5-201ENST00000299798 3736 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGA1P17096 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGA1P17096 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC16.33■□□□□ 0.2
HMGA1P17096 ASB6-203ENST00000450050 4535 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGA1P17096 RPN1-201ENST00000296255 2314 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGA1P17096 LOXL3-203ENST00000409249 2431 ntTSL 5 BASIC16.33■□□□□ 0.2
HMGA1P17096 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
HMGA1P17096 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
HMGA1P17096 TLX1-201ENST00000370196 2906 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGA1P17096 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGA1P17096 STIM2-203ENST00000467011 3925 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGA1P17096 ZSCAN10-201ENST00000252463 2463 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGA1P17096 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGA1P17096 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGA1P17096 AC025165.1-201ENST00000356672 2355 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGA1P17096 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGA1P17096 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGA1P17096 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.32■□□□□ 0.2
HMGA1P17096 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC16.32■□□□□ 0.2
HMGA1P17096 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGA1P17096 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGA1P17096 COL23A1-202ENST00000407622 2329 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
HMGA1P17096 DGCR6-202ENST00000413981 1039 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGA1P17096 FAM104B-207ENST00000489298 712 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
HMGA1P17096 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGA1P17096 LINC02109-201ENST00000565798 869 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGA1P17096 CMTM3-212ENST00000566121 572 ntTSL 3 BASIC16.32■□□□□ 0.2
HMGA1P17096 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGA1P17096 SNAI3-AS1-206ENST00000569786 588 ntTSL 3 BASIC16.32■□□□□ 0.2
HMGA1P17096 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
HMGA1P17096 IFT20-206ENST00000578122 834 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGA1P17096 IFT20-208ENST00000578985 831 ntTSL 3 BASIC16.32■□□□□ 0.2
HMGA1P17096 TBCB-211ENST00000589996 724 ntTSL 3 BASIC16.32■□□□□ 0.2
HMGA1P17096 ATF5-205ENST00000600336 682 ntTSL 2 BASIC16.32■□□□□ 0.2
HMGA1P17096 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC16.32■□□□□ 0.2
HMGA1P17096 AC084018.2-201ENST00000613093 2607 ntBASIC16.32■□□□□ 0.2
HMGA1P17096 AC133552.6-201ENST00000613406 534 ntBASIC16.32■□□□□ 0.2
HMGA1P17096 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC16.32■□□□□ 0.2
HMGA1P17096 PRRT4-201ENST00000446477 3544 ntAPPRIS P1 TSL 5 BASIC16.32■□□□□ 0.2
HMGA1P17096 AMOTL2-211ENST00000513145 2653 ntAPPRIS ALT1 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGA1P17096 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.32■□□□□ 0.2
HMGA1P17096 GPR158-AS1-201ENST00000449643 2433 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGA1P17096 CBS-202ENST00000359624 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 CBSL-203ENST00000618024 2353 ntAPPRIS P1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 AL118508.1-201ENST00000613502 2345 ntBASIC16.31■□□□□ 0.2
HMGA1P17096 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.31■□□□□ 0.2
HMGA1P17096 BTN1A1-202ENST00000613186 2266 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGA1P17096 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.31■□□□□ 0.2
HMGA1P17096 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.31■□□□□ 0.2
HMGA1P17096 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC16.31■□□□□ 0.2
HMGA1P17096 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 PGPEP1-201ENST00000252813 1409 ntTSL 2 BASIC16.31■□□□□ 0.2
HMGA1P17096 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC16.31■□□□□ 0.2
HMGA1P17096 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC16.31■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 25 ms