Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 F10-201ENST00000375551 1509 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
COL6A3P12111 MIR557-201ENST00000385239 98 ntBASIC16.12■□□□□ 0.17
COL6A3P12111 AL606748.1-201ENST00000423919 655 ntTSL 3 BASIC16.12■□□□□ 0.17
COL6A3P12111 PDCD6-202ENST00000505221 672 ntTSL 3 BASIC16.12■□□□□ 0.17
COL6A3P12111 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC16.12■□□□□ 0.17
COL6A3P12111 AP004550.1-201ENST00000532652 514 ntTSL 3 BASIC16.12■□□□□ 0.17
COL6A3P12111 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC16.12■□□□□ 0.17
COL6A3P12111 AC084781.1-201ENST00000613737 656 ntBASIC16.12■□□□□ 0.17
COL6A3P12111 PRSS45-202ENST00000620911 1041 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
COL6A3P12111 AC011471.3-201ENST00000623576 402 ntBASIC16.12■□□□□ 0.17
COL6A3P12111 SLC12A5-216ENST00000626701 617 ntTSL 3 BASIC16.12■□□□□ 0.17
COL6A3P12111 C14orf180-202ENST00000410013 2009 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A3P12111 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A3P12111 AAED1-201ENST00000375234 2863 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A3P12111 LETM1P2-201ENST00000597330 2178 ntBASIC16.11■□□□□ 0.17
COL6A3P12111 TRAPPC12-201ENST00000324266 2508 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A3P12111 SFTA3-204ENST00000518529 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A3P12111 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A3P12111 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC16.11■□□□□ 0.17
COL6A3P12111 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A3P12111 GTPBP3-201ENST00000324894 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A3P12111 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
COL6A3P12111 BNIP3P1-202ENST00000550043 1585 ntBASIC16.11■□□□□ 0.17
COL6A3P12111 SNORD3B-2-202ENST00000571722 791 ntBASIC16.11■□□□□ 0.17
COL6A3P12111 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC16.11■□□□□ 0.17
COL6A3P12111 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC16.11■□□□□ 0.17
COL6A3P12111 AC120498.9-201ENST00000339021 3867 ntBASIC16.11■□□□□ 0.17
COL6A3P12111 PCDHA6-202ENST00000527624 2231 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A3P12111 AL022326.1-201ENST00000434516 1778 ntTSL 2 BASIC16.11■□□□□ 0.17
COL6A3P12111 C16orf71-201ENST00000299320 2722 ntAPPRIS P2 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A3P12111 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
COL6A3P12111 FAM109A-204ENST00000548163 2317 ntAPPRIS P3 TSL 2 BASIC16.11■□□□□ 0.17
COL6A3P12111 SOX14-201ENST00000306087 2055 ntAPPRIS P1 BASIC16.11■□□□□ 0.17
COL6A3P12111 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A3P12111 CACNG7-202ENST00000391766 631 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A3P12111 LINC00173-201ENST00000470091 435 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A3P12111 AREG-202ENST00000502307 956 ntTSL 5 BASIC16.11■□□□□ 0.17
COL6A3P12111 AP003398.1-201ENST00000531124 318 ntBASIC16.11■□□□□ 0.17
COL6A3P12111 MBD3L2B-201ENST00000636986 860 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A3P12111 HEYL-201ENST00000372852 3661 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A3P12111 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC16.11■□□□□ 0.17
COL6A3P12111 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.11■□□□□ 0.17
COL6A3P12111 NIFK-AS1-203ENST00000419902 1316 ntTSL 2 BASIC16.11■□□□□ 0.17
COL6A3P12111 SCP2-213ENST00000528311 1896 ntTSL 2 BASIC16.11■□□□□ 0.17
COL6A3P12111 EXOC5-201ENST00000340918 2632 ntTSL 2 BASIC16.11■□□□□ 0.17
COL6A3P12111 EXT2-202ENST00000358681 2997 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A3P12111 TMEM208-201ENST00000304800 793 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A3P12111 AL136309.1-201ENST00000403917 691 ntBASIC16.1■□□□□ 0.17
COL6A3P12111 AL118508.1-202ENST00000411595 709 ntTSL 2 BASIC16.1■□□□□ 0.17
COL6A3P12111 AL157832.2-206ENST00000428178 601 ntTSL 3 BASIC16.1■□□□□ 0.17
COL6A3P12111 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC16.1■□□□□ 0.17
COL6A3P12111 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC16.1■□□□□ 0.17
COL6A3P12111 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC16.1■□□□□ 0.17
COL6A3P12111 GDNF-207ENST00000515058 764 ntTSL 5 BASIC16.1■□□□□ 0.17
COL6A3P12111 SDHAF2-206ENST00000542074 835 ntTSL 2 BASIC16.1■□□□□ 0.17
COL6A3P12111 AC015912.3-201ENST00000619432 348 ntBASIC16.1■□□□□ 0.17
COL6A3P12111 GCSH-209ENST00000639689 2412 ntTSL 5 BASIC16.1■□□□□ 0.17
COL6A3P12111 TMEM235-202ENST00000421688 2490 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
COL6A3P12111 AC005052.1-201ENST00000625181 2492 ntBASIC16.1■□□□□ 0.17
COL6A3P12111 PACRGL-202ENST00000360916 2073 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A3P12111 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC16.1■□□□□ 0.17
COL6A3P12111 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A3P12111 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A3P12111 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A3P12111 SUN1-204ENST00000403868 978 ntTSL 2 BASIC16.1■□□□□ 0.17
COL6A3P12111 AC004837.1-201ENST00000446267 564 ntBASIC16.1■□□□□ 0.17
COL6A3P12111 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A3P12111 DHDDS-217ENST00000526219 1072 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A3P12111 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A3P12111 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC16.1■□□□□ 0.17
COL6A3P12111 PTOV1-AS2-203ENST00000601893 719 ntTSL 4 BASIC16.1■□□□□ 0.17
COL6A3P12111 ANKS3-201ENST00000304283 2662 ntAPPRIS P1 TSL 2 BASIC16.1■□□□□ 0.17
COL6A3P12111 BX323043.1-201ENST00000641006 1765 ntBASIC16.1■□□□□ 0.17
COL6A3P12111 KRT6C-201ENST00000252250 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A3P12111 KRT6B-201ENST00000252252 2282 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A3P12111 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A3P12111 CD9-203ENST00000382518 1556 ntAPPRIS P1 TSL 5 BASIC16.1■□□□□ 0.17
COL6A3P12111 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.1■□□□□ 0.17
COL6A3P12111 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC16.1■□□□□ 0.17
COL6A3P12111 AL450469.2-201ENST00000427132 499 ntTSL 3 BASIC16.1■□□□□ 0.17
COL6A3P12111 HPN-206ENST00000597419 1212 ntTSL 5 BASIC16.1■□□□□ 0.17
COL6A3P12111 RNF32-202ENST00000317955 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A3P12111 COMMD6-203ENST00000377615 1793 ntAPPRIS P1 TSL 5 BASIC16.09■□□□□ 0.17
COL6A3P12111 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A3P12111 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A3P12111 UEVLD-203ENST00000379387 1848 ntTSL 2 BASIC16.09■□□□□ 0.17
COL6A3P12111 NF2-208ENST00000403435 2568 ntTSL 5 BASIC16.09■□□□□ 0.17
COL6A3P12111 LGI3-201ENST00000306317 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A3P12111 SPIDR-227ENST00000541342 3311 ntAPPRIS ALT2 TSL 2 BASIC16.09■□□□□ 0.17
COL6A3P12111 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A3P12111 ATP1A1-AS1-202ENST00000369492 1011 ntTSL 1 (best) BASIC16.09■□□□□ 0.17
COL6A3P12111 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC16.09■□□□□ 0.17
COL6A3P12111 CHTF8-204ENST00000518041 567 ntTSL 2 BASIC16.09■□□□□ 0.17
COL6A3P12111 AC090857.1-201ENST00000527400 390 ntBASIC16.09■□□□□ 0.17
COL6A3P12111 POLD4-208ENST00000532830 904 ntTSL 3 BASIC16.09■□□□□ 0.17
COL6A3P12111 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
COL6A3P12111 EXOSC5-204ENST00000596905 826 ntTSL 2 BASIC16.09■□□□□ 0.17
COL6A3P12111 CADM1-221ENST00000612235 1042 ntTSL 5 BASIC16.09■□□□□ 0.17
COL6A3P12111 ZKSCAN7-205ENST00000426540 2791 ntAPPRIS P1 TSL 2 BASIC16.09■□□□□ 0.17
COL6A3P12111 HLA-DQB1-204ENST00000399084 1734 ntAPPRIS P1 BASIC16.09■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 61.1 ms