Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 TNFRSF13C-201ENST00000291232 3944 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.27
APOEP02649 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC16.71■□□□□ 0.26
APOEP02649 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC16.71■□□□□ 0.26
APOEP02649 ATP6V0E1-203ENST00000519374 1433 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 AL691432.1-201ENST00000596308 1422 ntBASIC16.7■□□□□ 0.26
APOEP02649 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC16.7■□□□□ 0.26
APOEP02649 SMIM5-201ENST00000375215 1546 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.7■□□□□ 0.26
APOEP02649 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.7■□□□□ 0.26
APOEP02649 AL136982.4-201ENST00000437689 1740 ntBASIC16.7■□□□□ 0.26
APOEP02649 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC16.7■□□□□ 0.26
APOEP02649 SLC9A7-205ENST00000616978 10024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
APOEP02649 PDZRN3-201ENST00000263666 4248 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 SLC4A2-214ENST00000485713 4925 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 KIAA0368-201ENST00000259335 7391 ntAPPRIS P2 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
APOEP02649 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.7■□□□□ 0.26
APOEP02649 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
APOEP02649 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.7■□□□□ 0.26
APOEP02649 FAM92B-201ENST00000539556 1898 ntAPPRIS P2 TSL 5 BASIC16.7■□□□□ 0.26
APOEP02649 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
APOEP02649 FAM208A-201ENST00000355628 5239 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC16.7■□□□□ 0.26
APOEP02649 POP5-202ENST00000357500 801 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 HDAC8-202ENST00000373556 704 ntTSL 2 BASIC16.7■□□□□ 0.26
APOEP02649 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 AC004987.2-201ENST00000395959 1148 ntBASIC16.7■□□□□ 0.26
APOEP02649 AC092580.3-201ENST00000430932 139 ntBASIC16.7■□□□□ 0.26
APOEP02649 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC16.7■□□□□ 0.26
APOEP02649 SERBP1P3-201ENST00000459980 809 ntBASIC16.7■□□□□ 0.26
APOEP02649 LY6E-204ENST00000519546 971 ntTSL 2 BASIC16.7■□□□□ 0.26
APOEP02649 AC011467.4-201ENST00000594891 528 ntBASIC16.7■□□□□ 0.26
APOEP02649 AL390955.2-201ENST00000603032 514 ntBASIC16.7■□□□□ 0.26
APOEP02649 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC16.7■□□□□ 0.26
APOEP02649 CLN3-246ENST00000636228 1224 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 TYSND1-201ENST00000287078 3644 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 PTK6-202ENST00000542869 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 MRPL57-201ENST00000309594 2246 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC16.7■□□□□ 0.26
APOEP02649 TMEM57-202ENST00000399766 3294 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 GK2-201ENST00000358842 1942 ntAPPRIS P1 BASIC16.7■□□□□ 0.26
APOEP02649 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 PCDH1-203ENST00000394536 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC16.7■□□□□ 0.26
APOEP02649 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 AL365209.1-201ENST00000624418 6473 ntBASIC16.7■□□□□ 0.26
APOEP02649 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 PES1-202ENST00000354694 2295 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.7■□□□□ 0.26
APOEP02649 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
APOEP02649 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOEP02649 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.69■□□□□ 0.26
APOEP02649 RUNX1-202ENST00000344691 7274 ntAPPRIS ALT1 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOEP02649 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.69■□□□□ 0.26
APOEP02649 NFATC4-210ENST00000554050 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOEP02649 ABHD2-207ENST00000565973 2347 ntAPPRIS P1 TSL 5 BASIC16.69■□□□□ 0.26
APOEP02649 TC2N-201ENST00000340892 4708 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOEP02649 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOEP02649 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOEP02649 STOML1-204ENST00000541638 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOEP02649 LLGL2-201ENST00000167462 3480 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
APOEP02649 BBS5-201ENST00000295240 3475 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOEP02649 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOEP02649 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOEP02649 AL080243.2-201ENST00000418783 582 ntBASIC16.69■□□□□ 0.26
APOEP02649 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC16.69■□□□□ 0.26
APOEP02649 AC241585.1-201ENST00000433527 519 ntBASIC16.69■□□□□ 0.26
APOEP02649 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.69■□□□□ 0.26
APOEP02649 AL512638.1-201ENST00000457493 794 ntBASIC16.69■□□□□ 0.26
APOEP02649 RNA5SP421-201ENST00000516864 134 ntBASIC16.69■□□□□ 0.26
APOEP02649 AL109827.1-203ENST00000541176 872 ntAPPRIS P5 TSL 2 BASIC16.69■□□□□ 0.26
APOEP02649 TEX28P1-201ENST00000613479 1221 ntBASIC16.69■□□□□ 0.26
APOEP02649 TEX28P2-201ENST00000617764 1221 ntBASIC16.69■□□□□ 0.26
APOEP02649 PODNL1-204ENST00000538517 2744 ntTSL 2 BASIC16.69■□□□□ 0.26
APOEP02649 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
APOEP02649 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC16.69■□□□□ 0.26
APOEP02649 C1QTNF6-202ENST00000397110 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOEP02649 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
APOEP02649 AXIN2-202ENST00000375702 2541 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
APOEP02649 SERTAD4-201ENST00000367012 5219 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOEP02649 TRIM24-202ENST00000415680 3799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
APOEP02649 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
APOEP02649 ASS1-204ENST00000372394 1973 ntAPPRIS P1 TSL 2 BASIC16.69■□□□□ 0.26
APOEP02649 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.69■□□□□ 0.26
APOEP02649 AC100757.3-201ENST00000622361 1406 ntBASIC16.69■□□□□ 0.26
APOEP02649 ATP6AP2-201ENST00000378438 2022 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
APOEP02649 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.69■□□□□ 0.26
APOEP02649 SCARB1-202ENST00000339570 3329 ntTSL 5 BASIC16.68■□□□□ 0.26
APOEP02649 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 PRR5-203ENST00000403581 2279 ntTSL 2 BASIC16.68■□□□□ 0.26
APOEP02649 PSEN2-203ENST00000422240 1947 ntAPPRIS ALT1 TSL 2 BASIC16.68■□□□□ 0.26
APOEP02649 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC16.68■□□□□ 0.26
APOEP02649 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
APOEP02649 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Retrieved 100 of 98,524 protein–RNA pairs in 27.3 ms