Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 UCP2-201ENST00000310473 2113 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SIX3O95343 TBC1D7-202ENST00000356436 1116 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SIX3O95343 TBC1D7-204ENST00000379300 1276 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SIX3O95343 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SIX3O95343 HLA-H-201ENST00000383620 1096 ntBASIC15.57■□□□□ 0.08
SIX3O95343 HRAS-204ENST00000417302 1233 ntTSL 5 BASIC15.57■□□□□ 0.08
SIX3O95343 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC15.57■□□□□ 0.08
SIX3O95343 HRAS-205ENST00000451590 1151 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
SIX3O95343 ALG1L5P-201ENST00000482043 771 ntBASIC15.57■□□□□ 0.08
SIX3O95343 HELT-204ENST00000515777 841 ntAPPRIS P4 TSL 1 (best) BASIC15.57■□□□□ 0.08
SIX3O95343 IGHV3-62-201ENST00000520057 340 ntBASIC15.57■□□□□ 0.08
SIX3O95343 KRT18P58-201ENST00000527480 1120 ntBASIC15.57■□□□□ 0.08
SIX3O95343 SLC25A39P2-201ENST00000537614 270 ntBASIC15.57■□□□□ 0.08
SIX3O95343 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC15.57■□□□□ 0.08
SIX3O95343 AC006538.3-201ENST00000612495 578 ntBASIC15.57■□□□□ 0.08
SIX3O95343 C20orf181-201ENST00000623918 480 ntBASIC15.57■□□□□ 0.08
SIX3O95343 SLC25A33-201ENST00000302692 3854 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SIX3O95343 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SIX3O95343 SNHG15-202ENST00000577700 3116 ntTSL 2 BASIC15.57■□□□□ 0.08
SIX3O95343 WDR45-206ENST00000376368 1381 ntTSL 1 (best) BASIC15.57■□□□□ 0.08
SIX3O95343 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
SIX3O95343 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SIX3O95343 C18orf15-201ENST00000623680 2534 ntBASIC15.57■□□□□ 0.08
SIX3O95343 UXT-AS1-201ENST00000590504 1525 ntBASIC15.57■□□□□ 0.08
SIX3O95343 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SIX3O95343 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC15.57■□□□□ 0.08
SIX3O95343 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.57■□□□□ 0.08
SIX3O95343 CYP4F24P-201ENST00000586049 1580 ntBASIC15.57■□□□□ 0.08
SIX3O95343 CERCAM-213ENST00000612334 1554 ntAPPRIS ALT2 TSL 5 BASIC15.57■□□□□ 0.08
SIX3O95343 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SIX3O95343 PYCR2-201ENST00000343818 1689 ntAPPRIS P1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SIX3O95343 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.57■□□□□ 0.08
SIX3O95343 HMGA1-202ENST00000347617 1773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.57■□□□□ 0.08
SIX3O95343 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC15.57■□□□□ 0.08
SIX3O95343 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 MVB12B-201ENST00000361171 4819 ntAPPRIS P1 TSL 2 BASIC15.56■□□□□ 0.08
SIX3O95343 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.56■□□□□ 0.08
SIX3O95343 TMPO-203ENST00000343315 2465 ntTSL 5 BASIC15.56■□□□□ 0.08
SIX3O95343 POFUT2-214ENST00000615172 2472 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 NETO2-202ENST00000562435 7481 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 TMEM97-201ENST00000226230 2568 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 COX10-201ENST00000261643 2873 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 LEF1-202ENST00000379951 3477 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 PMP22-202ENST00000395936 816 ntTSL 3 BASIC15.56■□□□□ 0.08
SIX3O95343 AC004832.2-201ENST00000426397 482 ntBASIC15.56■□□□□ 0.08
SIX3O95343 AC097532.1-201ENST00000440802 322 ntTSL 2 BASIC15.56■□□□□ 0.08
SIX3O95343 AC080075.1-201ENST00000469747 427 ntTSL 2 BASIC15.56■□□□□ 0.08
SIX3O95343 TMUB1-204ENST00000476627 882 ntAPPRIS P1 TSL 3 BASIC15.56■□□□□ 0.08
SIX3O95343 AC069335.1-201ENST00000489972 472 ntBASIC15.56■□□□□ 0.08
SIX3O95343 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.56■□□□□ 0.08
SIX3O95343 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC15.56■□□□□ 0.08
SIX3O95343 RPL8-207ENST00000528957 1015 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC15.56■□□□□ 0.08
SIX3O95343 GNAO1-210ENST00000569295 930 ntTSL 2 BASIC15.56■□□□□ 0.08
SIX3O95343 KF456478.1-201ENST00000585980 472 ntTSL 3 BASIC15.56■□□□□ 0.08
SIX3O95343 AC005330.1-201ENST00000590086 1238 ntTSL 5 BASIC15.56■□□□□ 0.08
SIX3O95343 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 LINC00623-204ENST00000617702 746 ntTSL 5 BASIC15.56■□□□□ 0.08
SIX3O95343 AC010619.2-201ENST00000595815 1421 ntTSL 2 BASIC15.56■□□□□ 0.08
SIX3O95343 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 CD1E-212ENST00000368167 1458 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 AP3S2-216ENST00000617003 1561 ntBASIC15.56■□□□□ 0.08
SIX3O95343 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.56■□□□□ 0.08
SIX3O95343 TDRD6-203ENST00000544460 8887 ntAPPRIS ALT2 TSL 2 BASIC15.56■□□□□ 0.08
SIX3O95343 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC15.56■□□□□ 0.08
SIX3O95343 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC15.56■□□□□ 0.08
SIX3O95343 AC112484.1-201ENST00000508239 2291 ntAPPRIS P5 TSL 2 BASIC15.56■□□□□ 0.08
SIX3O95343 LAT2-202ENST00000344995 2363 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 AL513477.1-201ENST00000602865 2407 ntBASIC15.56■□□□□ 0.08
SIX3O95343 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 CACNB3-201ENST00000301050 2696 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC15.56■□□□□ 0.08
SIX3O95343 MYLK2-201ENST00000375985 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 MED16-207ENST00000589119 2772 ntAPPRIS P2 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 DYM-201ENST00000269445 5049 ntAPPRIS P1 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 MSI2-201ENST00000284073 6364 ntAPPRIS P4 TSL 1 (best) BASIC15.56■□□□□ 0.08
SIX3O95343 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SIX3O95343 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
SIX3O95343 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SIX3O95343 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC15.55■□□□□ 0.08
SIX3O95343 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SIX3O95343 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.55■□□□□ 0.08
SIX3O95343 SMC4-204ENST00000462787 5033 ntTSL 2 BASIC15.55■□□□□ 0.08
SIX3O95343 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SIX3O95343 CACNA1A-240ENST00000637432 7809 ntAPPRIS ALT2 TSL 5 BASIC15.55■□□□□ 0.08
SIX3O95343 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SIX3O95343 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.55■□□□□ 0.08
SIX3O95343 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SIX3O95343 IGSF11-209ENST00000491903 1487 ntTSL 2 BASIC15.55■□□□□ 0.08
SIX3O95343 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SIX3O95343 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC15.55■□□□□ 0.08
SIX3O95343 DHFR-201ENST00000439211 3917 ntAPPRIS P1 TSL 1 (best) BASIC15.55■□□□□ 0.08
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms