Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC17.76■□□□□ 0.43
MSH4O15457 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC17.76■□□□□ 0.43
MSH4O15457 MIR8072-201ENST00000614241 80 ntBASIC17.76■□□□□ 0.43
MSH4O15457 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH4O15457 ILF3-AS1-201ENST00000591501 1983 ntBASIC17.76■□□□□ 0.43
MSH4O15457 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSH4O15457 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH4O15457 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSH4O15457 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSH4O15457 MFSD11-202ENST00000355954 2832 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSH4O15457 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC17.75■□□□□ 0.43
MSH4O15457 SIN3B-206ENST00000595541 2767 ntTSL 2 BASIC17.75■□□□□ 0.43
MSH4O15457 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC17.75■□□□□ 0.43
MSH4O15457 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC17.75■□□□□ 0.43
MSH4O15457 SEMA5B-202ENST00000357599 4792 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH4O15457 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC17.75■□□□□ 0.43
MSH4O15457 PMS1-213ENST00000441310 3225 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH4O15457 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
MSH4O15457 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC17.75■□□□□ 0.43
MSH4O15457 AC092127.1-201ENST00000567093 3455 ntBASIC17.75■□□□□ 0.43
MSH4O15457 MMP2-201ENST00000219070 3741 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH4O15457 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
MSH4O15457 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH4O15457 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH4O15457 YBEY-202ENST00000339195 890 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
MSH4O15457 TCEAL3-202ENST00000372627 1113 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH4O15457 AQP7-204ENST00000379506 1062 ntTSL 2 BASIC17.75■□□□□ 0.43
MSH4O15457 YBEY-203ENST00000397691 764 ntAPPRIS P1 TSL 3 BASIC17.75■□□□□ 0.43
MSH4O15457 PABPN1L-202ENST00000419291 1272 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH4O15457 AC098850.1-201ENST00000419919 790 ntBASIC17.75■□□□□ 0.43
MSH4O15457 LINC00351-201ENST00000424926 911 ntTSL 3 BASIC17.75■□□□□ 0.43
MSH4O15457 AC093459.1-202ENST00000438963 768 ntTSL 3 BASIC17.75■□□□□ 0.43
MSH4O15457 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC17.75■□□□□ 0.43
MSH4O15457 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
MSH4O15457 TMEM176B-206ENST00000492607 1265 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
MSH4O15457 FADS2-205ENST00000517839 469 ntTSL 3 BASIC17.75■□□□□ 0.43
MSH4O15457 LINC02356-202ENST00000552663 314 ntTSL 3 BASIC17.75■□□□□ 0.43
MSH4O15457 COMMD4-217ENST00000567195 677 ntTSL 2 BASIC17.75■□□□□ 0.43
MSH4O15457 AC140912.1-201ENST00000577171 1054 ntBASIC17.75■□□□□ 0.43
MSH4O15457 DBI-211ENST00000627093 554 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
MSH4O15457 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
MSH4O15457 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH4O15457 AL139384.1-201ENST00000612143 3047 ntBASIC17.75■□□□□ 0.43
MSH4O15457 EVC2-202ENST00000344408 4390 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH4O15457 MPIG6B-204ENST00000375809 2396 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH4O15457 SRGAP2B-207ENST00000641863 2367 ntAPPRIS P5 BASIC17.75■□□□□ 0.43
MSH4O15457 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH4O15457 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
MSH4O15457 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC17.74■□□□□ 0.43
MSH4O15457 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSH4O15457 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC17.74■□□□□ 0.43
MSH4O15457 ADGRB2-212ENST00000527361 4919 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH4O15457 AP3D1-202ENST00000355272 5034 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH4O15457 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH4O15457 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH4O15457 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH4O15457 MSC-AS1-208ENST00000522519 1537 ntTSL 2 BASIC17.74■□□□□ 0.43
MSH4O15457 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC17.74■□□□□ 0.43
MSH4O15457 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC17.74■□□□□ 0.43
MSH4O15457 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH4O15457 NDUFA2-201ENST00000252102 804 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH4O15457 AC087499.6-201ENST00000411576 835 ntBASIC17.74■□□□□ 0.43
MSH4O15457 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
MSH4O15457 STMN1-204ENST00000426559 948 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSH4O15457 AC087294.1-202ENST00000439136 487 ntTSL 3 BASIC17.74■□□□□ 0.43
MSH4O15457 MOGAT3-203ENST00000440203 1219 ntAPPRIS ALT2 TSL 2 BASIC17.74■□□□□ 0.43
MSH4O15457 MDH2-205ENST00000461263 648 ntTSL 2 BASIC17.74■□□□□ 0.43
MSH4O15457 AC139713.2-206ENST00000499587 566 ntTSL 4 BASIC17.74■□□□□ 0.43
MSH4O15457 AP005018.1-201ENST00000525475 301 ntBASIC17.74■□□□□ 0.43
MSH4O15457 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC17.74■□□□□ 0.43
MSH4O15457 AC009163.1-201ENST00000530512 573 ntTSL 4 BASIC17.74■□□□□ 0.43
MSH4O15457 PXN-AS1-204ENST00000542265 854 ntTSL 2 BASIC17.74■□□□□ 0.43
MSH4O15457 RIC8B-209ENST00000549643 571 ntTSL 4 BASIC17.74■□□□□ 0.43
MSH4O15457 ZNF710-AS1-201ENST00000558334 1168 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSH4O15457 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC17.74■□□□□ 0.43
MSH4O15457 AC025048.6-201ENST00000634326 1161 ntBASIC17.74■□□□□ 0.43
MSH4O15457 AC008741.2-201ENST00000612792 3115 ntBASIC17.74■□□□□ 0.43
MSH4O15457 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSH4O15457 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH4O15457 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC17.74■□□□□ 0.43
MSH4O15457 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
MSH4O15457 PGBD2-201ENST00000329291 2136 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH4O15457 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC17.74■□□□□ 0.43
MSH4O15457 DNM2-203ENST00000389253 3581 ntTSL 5 BASIC17.74■□□□□ 0.43
MSH4O15457 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
MSH4O15457 AC007950.2-201ENST00000615045 2347 ntBASIC17.73■□□□□ 0.43
MSH4O15457 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC17.73■□□□□ 0.43
MSH4O15457 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC17.73■□□□□ 0.43
MSH4O15457 CDS1-201ENST00000295887 4461 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH4O15457 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC17.73■□□□□ 0.43
MSH4O15457 AL121723.1-201ENST00000445194 1519 ntBASIC17.73■□□□□ 0.43
MSH4O15457 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH4O15457 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH4O15457 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC17.73■□□□□ 0.43
MSH4O15457 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MSH4O15457 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
MSH4O15457 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
MSH4O15457 PKIG-203ENST00000372887 769 ntTSL 3 BASIC17.73■□□□□ 0.43
MSH4O15457 RN7SL399P-201ENST00000471648 279 ntBASIC17.73■□□□□ 0.43
MSH4O15457 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC17.73■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms