Protein–RNA interactions for Protein: Q9Y2B5

VPS9D1, VPS9 domain-containing protein 1, humanhuman

Predictions only

Length 631 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1Q9Y2B5 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 PTGES3-204ENST00000448157 1017 ntTSL 2 BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 AC092691.1-201ENST00000484092 554 ntTSL 4 BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 AC113382.2-201ENST00000506911 646 ntTSL 3 BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 AC090519.2-201ENST00000559034 655 ntTSL 5 BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 AC010327.4-202ENST00000591484 748 ntBASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 ALKBH7-203ENST00000599849 556 ntTSL 3 BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 AC018529.1-201ENST00000613063 361 ntBASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 AL163636.2-201ENST00000553909 1498 ntAPPRIS P1 TSL 2 BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 ZNF276-201ENST00000289816 4589 ntTSL 1 (best) BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 MGME1-201ENST00000377704 1781 ntTSL 3 BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.14
VPS9D1Q9Y2B5 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 CHD4-210ENST00000544040 6514 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 NSFL1C-201ENST00000216879 3568 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 BANP-217ENST00000479780 1551 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 PAX6-276ENST00000640684 1557 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 KCNK9-203ENST00000520439 1441 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 TPGS2-220ENST00000610723 1426 ntTSL 3 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 TSTD1-203ENST00000368024 457 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 AC211486.1-202ENST00000416371 468 ntBASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 DARS-AS1-203ENST00000438432 768 ntTSL 3 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 LINC01143-201ENST00000449073 625 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 AC112482.1-201ENST00000492080 688 ntBASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 AC211476.1-201ENST00000503899 468 ntBASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 AC122138.1-201ENST00000508799 646 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 LIAS-205ENST00000509519 1005 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 AZIN1-AS1-212ENST00000520538 476 ntTSL 3 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 PPP1R42-212ENST00000522909 1282 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 GATD1-206ENST00000526325 756 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 GMDS-AS1-205ENST00000529893 900 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 DCUN1D5-209ENST00000531543 1030 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 AL450472.2-201ENST00000603663 1156 ntBASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 AC092953.2-201ENST00000608000 699 ntBASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 AL732314.4-201ENST00000627627 515 ntTSL 4 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 COL11A2-201ENST00000341947 6425 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 INPP5B-202ENST00000373023 4694 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 AC105202.1-204ENST00000502167 1781 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 ZSWIM8-201ENST00000398706 6062 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 BICD2-202ENST00000375512 4636 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 CNGB1-201ENST00000251102 5641 ntAPPRIS P3 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 IL12RB2-201ENST00000262345 4040 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 MARK4-202ENST00000300843 5209 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 SLITRK4-201ENST00000338017 3357 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
VPS9D1Q9Y2B5 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 AL136982.4-201ENST00000437689 1740 ntBASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 ELMO1-209ENST00000448602 2621 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 AL596257.1-201ENST00000641463 2694 ntBASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 RPS17-201ENST00000330244 592 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 SUV39H2-202ENST00000354919 1233 ntAPPRIS ALT2 TSL 5 BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 CAPG-205ENST00000409921 1195 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 TMEM91-205ENST00000436170 864 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 KLRC1-204ENST00000536188 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 CSRP2-202ENST00000546966 754 ntAPPRIS P1 TSL 3 BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 AC092718.3-202ENST00000564536 1032 ntAPPRIS P5 TSL 5 BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 AC068594.1-203ENST00000581153 695 ntTSL 2 BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 MRPL34-202ENST00000594999 555 ntAPPRIS P2 TSL 2 BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 GTF2IRD2-205ENST00000614386 578 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 AC009093.7-201ENST00000623853 1223 ntBASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 MYEF2-215ENST00000610570 2591 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 FGD4-212ENST00000534526 2977 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 CSK-210ENST00000567571 2443 ntAPPRIS P1 TSL 2 BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 ARVCF-204ENST00000406522 2682 ntTSL 5 BASIC15.88■□□□□ 0.13
VPS9D1Q9Y2B5 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC15.88■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 44.1 ms