Protein–RNA interactions for Protein: Q9NP79

VTA1, Vacuolar protein sorting-associated protein VTA1 homolog, humanhuman

Predictions only

Length 307 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VTA1Q9NP79 SUN1-204ENST00000403868 978 ntTSL 2 BASIC17.67■□□□□ 0.42
VTA1Q9NP79 MIR1908-201ENST00000410394 80 ntBASIC17.67■□□□□ 0.42
VTA1Q9NP79 AC113608.2-201ENST00000448379 487 ntTSL 3 BASIC17.67■□□□□ 0.42
VTA1Q9NP79 FAM25G-201ENST00000452267 345 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VTA1Q9NP79 STAG3L5P-205ENST00000473757 1255 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VTA1Q9NP79 ARL2-204ENST00000529384 830 ntAPPRIS P1 TSL 3 BASIC17.67■□□□□ 0.42
VTA1Q9NP79 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VTA1Q9NP79 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC17.67■□□□□ 0.42
VTA1Q9NP79 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC17.67■□□□□ 0.42
VTA1Q9NP79 SMCO4-206ENST00000596676 180 ntAPPRIS P1 BASIC17.67■□□□□ 0.42
VTA1Q9NP79 EBAG9-209ENST00000614147 1179 ntTSL 5 BASIC17.67■□□□□ 0.42
VTA1Q9NP79 SH2D3C-213ENST00000629203 2478 ntTSL 2 BASIC17.67■□□□□ 0.42
VTA1Q9NP79 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VTA1Q9NP79 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.67■□□□□ 0.42
VTA1Q9NP79 COMT-205ENST00000406520 1339 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
VTA1Q9NP79 MANSC1-201ENST00000396349 2220 ntTSL 2 BASIC17.67■□□□□ 0.42
VTA1Q9NP79 ACSF3-204ENST00000406948 2247 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VTA1Q9NP79 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VTA1Q9NP79 EIF2AK4-201ENST00000263791 5499 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VTA1Q9NP79 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
VTA1Q9NP79 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC17.67■□□□□ 0.42
VTA1Q9NP79 SLC5A2-201ENST00000330498 2271 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
VTA1Q9NP79 SLCO2B1-205ENST00000525650 2121 ntTSL 2 BASIC17.66■□□□□ 0.42
VTA1Q9NP79 PARVB-203ENST00000404989 1591 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC17.66■□□□□ 0.42
VTA1Q9NP79 TBC1D26-206ENST00000579428 1583 ntTSL 2 BASIC17.66■□□□□ 0.42
VTA1Q9NP79 QPCTL-201ENST00000012049 2310 ntAPPRIS P1 TSL 2 BASIC17.66■□□□□ 0.42
VTA1Q9NP79 TCF4-201ENST00000354452 3482 ntAPPRIS ALT1 TSL 5 BASIC17.66■□□□□ 0.42
VTA1Q9NP79 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 UCP3-202ENST00000426995 1406 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 PARD3-201ENST00000340077 3518 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 POLR2J-201ENST00000292614 932 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 ZBTB12BP-201ENST00000314232 1122 ntBASIC17.66■□□□□ 0.42
VTA1Q9NP79 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC17.66■□□□□ 0.42
VTA1Q9NP79 KRTAP1-4-201ENST00000377747 408 ntAPPRIS P1 BASIC17.66■□□□□ 0.42
VTA1Q9NP79 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 AC106786.2-201ENST00000506859 561 ntTSL 4 BASIC17.66■□□□□ 0.42
VTA1Q9NP79 NOP2-211ENST00000540228 668 ntTSL 2 BASIC17.66■□□□□ 0.42
VTA1Q9NP79 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC17.66■□□□□ 0.42
VTA1Q9NP79 AC009134.1-201ENST00000571939 443 ntTSL 3 BASIC17.66■□□□□ 0.42
VTA1Q9NP79 MIR4538-201ENST00000581377 78 ntBASIC17.66■□□□□ 0.42
VTA1Q9NP79 DHX33-201ENST00000225296 5618 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
VTA1Q9NP79 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
VTA1Q9NP79 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 KDM4B-201ENST00000159111 5593 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 ZCCHC17-206ENST00000616393 1534 ntTSL 5 BASIC17.66■□□□□ 0.42
VTA1Q9NP79 PARVB-210ENST00000619710 1530 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC17.66■□□□□ 0.42
VTA1Q9NP79 PI16-201ENST00000373674 2190 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 NAGK-208ENST00000455662 1778 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
VTA1Q9NP79 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VTA1Q9NP79 TMEM65-201ENST00000297632 9029 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VTA1Q9NP79 ELN-206ENST00000380553 2703 ntAPPRIS ALT2 TSL 2 BASIC17.65■□□□□ 0.42
VTA1Q9NP79 BLCAP-201ENST00000373537 2073 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VTA1Q9NP79 NEIL2-204ENST00000455213 2323 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
VTA1Q9NP79 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
VTA1Q9NP79 ZDHHC8-202ENST00000334554 5046 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VTA1Q9NP79 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VTA1Q9NP79 KRT35-202ENST00000393989 1670 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
VTA1Q9NP79 PLCB2-201ENST00000260402 4616 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
VTA1Q9NP79 HPN-201ENST00000262626 2363 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VTA1Q9NP79 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VTA1Q9NP79 CGB5-201ENST00000301408 841 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VTA1Q9NP79 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC17.65■□□□□ 0.42
VTA1Q9NP79 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC17.65■□□□□ 0.42
VTA1Q9NP79 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC17.65■□□□□ 0.42
VTA1Q9NP79 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VTA1Q9NP79 CD63-208ENST00000549117 1233 ntAPPRIS P1 TSL 3 BASIC17.65■□□□□ 0.42
VTA1Q9NP79 KRT90P-201ENST00000549264 1064 ntBASIC17.65■□□□□ 0.42
VTA1Q9NP79 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC17.65■□□□□ 0.42
VTA1Q9NP79 RGS12-203ENST00000344733 5469 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
VTA1Q9NP79 TEKT4-201ENST00000295201 1505 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VTA1Q9NP79 THSD1-202ENST00000349258 3189 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VTA1Q9NP79 CTSD-207ENST00000636571 1790 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
VTA1Q9NP79 SPECC1-203ENST00000395525 2536 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VTA1Q9NP79 TBC1D4-202ENST00000377636 6364 ntAPPRIS P3 TSL 2 BASIC17.65■□□□□ 0.42
VTA1Q9NP79 NUP50-203ENST00000407019 2059 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
VTA1Q9NP79 GLRB-201ENST00000264428 3126 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
VTA1Q9NP79 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
VTA1Q9NP79 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC17.65■□□□□ 0.42
VTA1Q9NP79 C17orf74-201ENST00000333870 1651 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.42
VTA1Q9NP79 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.42
VTA1Q9NP79 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC17.64■□□□□ 0.41
VTA1Q9NP79 LEF1-201ENST00000265165 3068 ntAPPRIS P3 TSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 UBE2Q2-201ENST00000267938 3130 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC17.64■□□□□ 0.41
VTA1Q9NP79 ASXL1-212ENST00000620121 5374 ntAPPRIS ALT2 TSL 5 BASIC17.64■□□□□ 0.41
VTA1Q9NP79 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 CSTB-204ENST00000640406 2354 ntTSL 2 BASIC17.64■□□□□ 0.41
VTA1Q9NP79 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
VTA1Q9NP79 PARVG-206ENST00000444313 3523 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms