Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC15.3■□□□□ 0.04
PIF1Q9H611 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PIF1Q9H611 FGF8-203ENST00000346714 694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PIF1Q9H611 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC15.3■□□□□ 0.04
PIF1Q9H611 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PIF1Q9H611 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.3■□□□□ 0.04
PIF1Q9H611 LIMS2-205ENST00000409455 2500 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PIF1Q9H611 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.3■□□□□ 0.04
PIF1Q9H611 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PIF1Q9H611 PRSS42-201ENST00000429665 882 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PIF1Q9H611 CT62-201ENST00000449977 1825 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PIF1Q9H611 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PIF1Q9H611 AC108073.2-201ENST00000464002 357 ntBASIC15.3■□□□□ 0.04
PIF1Q9H611 ABCB8-221ENST00000498578 2350 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PIF1Q9H611 AC093909.1-201ENST00000504731 1122 ntBASIC15.3■□□□□ 0.04
PIF1Q9H611 REPIN1-217ENST00000518514 478 ntTSL 3 BASIC15.3■□□□□ 0.04
PIF1Q9H611 NR2C2AP-204ENST00000538165 891 ntTSL 2 BASIC15.3■□□□□ 0.04
PIF1Q9H611 DPF3-204ENST00000546183 1514 ntTSL 2 BASIC15.3■□□□□ 0.04
PIF1Q9H611 LINC00639-201ENST00000553932 4496 ntTSL 2 BASIC15.3■□□□□ 0.04
PIF1Q9H611 CIPC-205ENST00000555437 566 ntTSL 3 BASIC15.3■□□□□ 0.04
PIF1Q9H611 AC105339.3-201ENST00000560043 636 ntBASIC15.3■□□□□ 0.04
PIF1Q9H611 AC012640.2-201ENST00000561606 901 ntBASIC15.3■□□□□ 0.04
PIF1Q9H611 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC15.3■□□□□ 0.04
PIF1Q9H611 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
PIF1Q9H611 CELP-203ENST00000624767 2414 ntTSL 5 BASIC15.3■□□□□ 0.04
PIF1Q9H611 LMX1B-201ENST00000355497 5809 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
PIF1Q9H611 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PIF1Q9H611 CCNY-201ENST00000265375 4768 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PIF1Q9H611 CUX1-214ENST00000550008 4350 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
PIF1Q9H611 FECH-201ENST00000262093 3853 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
PIF1Q9H611 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PIF1Q9H611 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
PIF1Q9H611 SAFB-205ENST00000588852 2842 ntAPPRIS ALT2 TSL 1 (best) BASIC15.3■□□□□ 0.04
PIF1Q9H611 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC15.3■□□□□ 0.04
PIF1Q9H611 CBS-204ENST00000398165 2605 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
PIF1Q9H611 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC15.29■□□□□ 0.04
PIF1Q9H611 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PIF1Q9H611 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PIF1Q9H611 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PIF1Q9H611 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PIF1Q9H611 KRT8-205ENST00000546897 1755 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
PIF1Q9H611 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PIF1Q9H611 TNS2-201ENST00000314250 5010 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PIF1Q9H611 SPSB2-203ENST00000519357 1496 ntTSL 2 BASIC15.29■□□□□ 0.04
PIF1Q9H611 AC020659.1-201ENST00000309874 2900 ntTSL 2 BASIC15.29■□□□□ 0.04
PIF1Q9H611 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PIF1Q9H611 FAM210A-202ENST00000402563 4240 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
PIF1Q9H611 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.29■□□□□ 0.04
PIF1Q9H611 KRTAP1-1-201ENST00000306271 903 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
PIF1Q9H611 ANAPC11-201ENST00000344877 918 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PIF1Q9H611 PQLC3-202ENST00000402361 696 ntTSL 2 BASIC15.29■□□□□ 0.04
PIF1Q9H611 FIGNL1-207ENST00000435566 593 ntTSL 4 BASIC15.29■□□□□ 0.04
PIF1Q9H611 AP000688.4-201ENST00000436303 446 ntTSL 3 BASIC15.29■□□□□ 0.04
PIF1Q9H611 LINC01503-203ENST00000436710 901 ntTSL 3 BASIC15.29■□□□□ 0.04
PIF1Q9H611 FAM185BP-201ENST00000443595 716 ntBASIC15.29■□□□□ 0.04
PIF1Q9H611 MOK-208ENST00000519058 917 ntTSL 2 BASIC15.29■□□□□ 0.04
PIF1Q9H611 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC15.29■□□□□ 0.04
PIF1Q9H611 ANAPC11-213ENST00000577747 672 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PIF1Q9H611 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC15.29■□□□□ 0.04
PIF1Q9H611 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC15.29■□□□□ 0.04
PIF1Q9H611 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC15.29■□□□□ 0.04
PIF1Q9H611 SLC22A7-203ENST00000372589 2549 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
PIF1Q9H611 CCDC183-AS1-201ENST00000414656 2386 ntTSL 2 BASIC15.29■□□□□ 0.04
PIF1Q9H611 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PIF1Q9H611 RSPH6A-202ENST00000597055 2306 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PIF1Q9H611 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PIF1Q9H611 ARHGEF28-202ENST00000296799 4424 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
PIF1Q9H611 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
PIF1Q9H611 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PIF1Q9H611 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC15.29■□□□□ 0.04
PIF1Q9H611 CLEC18C-210ENST00000569347 1970 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PIF1Q9H611 AC090616.6-203ENST00000579186 1945 ntBASIC15.29■□□□□ 0.04
PIF1Q9H611 SNAP47-213ENST00000617596 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PIF1Q9H611 APOLD1-201ENST00000326765 4724 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
PIF1Q9H611 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
PIF1Q9H611 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC15.29■□□□□ 0.04
PIF1Q9H611 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC15.29■□□□□ 0.04
PIF1Q9H611 SLC47A1-203ENST00000436810 1719 ntTSL 2 BASIC15.29■□□□□ 0.04
PIF1Q9H611 JPH4-201ENST00000356300 4278 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
PIF1Q9H611 KCP-203ENST00000610776 5108 ntTSL 5 BASIC15.29■□□□□ 0.04
PIF1Q9H611 HIST1H2AC-202ENST00000377791 1654 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PIF1Q9H611 TMEM41B-204ENST00000528080 3968 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PIF1Q9H611 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
PIF1Q9H611 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
PIF1Q9H611 CDC42-203ENST00000400259 2274 ntAPPRIS ALT1 TSL 5 BASIC15.28■□□□□ 0.04
PIF1Q9H611 PEX5-206ENST00000434354 2253 ntTSL 2 BASIC15.28■□□□□ 0.04
PIF1Q9H611 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PIF1Q9H611 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
PIF1Q9H611 RALGPS2-204ENST00000367635 5834 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PIF1Q9H611 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PIF1Q9H611 PHAX-201ENST00000297540 4288 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PIF1Q9H611 LMCD1-204ENST00000426878 1431 ntTSL 2 BASIC15.28■□□□□ 0.04
PIF1Q9H611 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PIF1Q9H611 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC15.28■□□□□ 0.04
PIF1Q9H611 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PIF1Q9H611 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
PIF1Q9H611 ASIC4-202ENST00000358078 2741 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
PIF1Q9H611 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC15.28■□□□□ 0.04
PIF1Q9H611 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
PIF1Q9H611 SIDT1-202ENST00000393830 2572 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms