Protein–RNA interactions for Protein: Q96II8

LRCH3, Leucine-rich repeat and calponin homology domain-containing protein 3, humanhuman

Predictions only

Length 777 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRCH3Q96II8 TPM1-205ENST00000357980 1800 ntTSL 2 BASIC17.14■□□□□ 0.33
LRCH3Q96II8 FAM49B-202ENST00000517654 1817 ntAPPRIS P1 TSL 5 BASIC17.14■□□□□ 0.33
LRCH3Q96II8 RNF34-201ENST00000361234 2066 ntAPPRIS ALT1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRCH3Q96II8 MAPRE1-201ENST00000375571 2623 ntAPPRIS P1 TSL 1 (best) BASIC17.14■□□□□ 0.33
LRCH3Q96II8 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC17.14■□□□□ 0.33
LRCH3Q96II8 B4GALNT2-201ENST00000300404 1906 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 CD2BP2-203ENST00000569466 1417 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 GUCY1B3-206ENST00000507146 2709 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 ETV3L-201ENST00000454449 1976 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 PHYH-202ENST00000396913 1732 ntTSL 5 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 MOAP1-202ENST00000556883 2529 ntAPPRIS P1 TSL 2 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 ALDH5A1-202ENST00000357578 5248 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 CCDC184-201ENST00000316554 2343 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 MIR1202-201ENST00000408529 83 ntBASIC17.13■□□□□ 0.33
LRCH3Q96II8 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 LINC00472-203ENST00000426635 2958 ntTSL 2 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 NKAIN1P1-201ENST00000435754 582 ntBASIC17.13■□□□□ 0.33
LRCH3Q96II8 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 RPL13P2-201ENST00000440687 659 ntBASIC17.13■□□□□ 0.33
LRCH3Q96II8 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 RPL13AP25-201ENST00000484130 612 ntBASIC17.13■□□□□ 0.33
LRCH3Q96II8 AC125604.1-201ENST00000496255 707 ntBASIC17.13■□□□□ 0.33
LRCH3Q96II8 CSTF3-206ENST00000524827 693 ntTSL 3 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 ANO1-AS1-201ENST00000524987 646 ntTSL 3 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 AL355102.5-201ENST00000554769 572 ntTSL 4 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 LYSMD2-204ENST00000560491 1026 ntTSL 3 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 AC135983.4-201ENST00000564116 1262 ntBASIC17.13■□□□□ 0.33
LRCH3Q96II8 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 AC021594.1-201ENST00000587174 636 ntTSL 3 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 AC073352.2-201ENST00000609385 439 ntBASIC17.13■□□□□ 0.33
LRCH3Q96II8 AL136301.1-201ENST00000615830 422 ntBASIC17.13■□□□□ 0.33
LRCH3Q96II8 HIST1H4A-201ENST00000617569 312 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 CFTRP2-201ENST00000634304 199 ntBASIC17.13■□□□□ 0.33
LRCH3Q96II8 B3GNT8-201ENST00000321702 1874 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 CABP1-204ENST00000453000 1857 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 NBL1-210ENST00000615215 2160 ntAPPRIS ALT2 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 NAGPA-201ENST00000312251 2202 ntAPPRIS P1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 CTTN-203ENST00000376561 2247 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 SLC25A3-217ENST00000552981 1351 ntAPPRIS ALT1 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 AC004835.1-201ENST00000428222 2907 ntTSL 5 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 USP2-202ENST00000455332 2903 ntTSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 INSIG1-203ENST00000344756 2623 ntTSL 5 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 REPIN1-203ENST00000444957 2969 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 MGAT2-201ENST00000305386 2687 ntAPPRIS P1 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC17.13■□□□□ 0.33
LRCH3Q96II8 MIB2-202ENST00000378708 3012 ntAPPRIS ALT2 TSL 5 BASIC17.13■□□□□ 0.33
LRCH3Q96II8 DPF2-205ENST00000528416 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRCH3Q96II8 PLEKHA8P1-201ENST00000256692 1839 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LRCH3Q96II8 TBC1D10A-203ENST00000403362 1833 ntAPPRIS ALT2 TSL 5 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRCH3Q96II8 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRCH3Q96II8 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 LHX9-204ENST00000367391 1623 ntTSL 5 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 LANCL3-201ENST00000378619 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRCH3Q96II8 KLK11-201ENST00000319720 1198 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRCH3Q96II8 LINC00437-201ENST00000414161 791 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LRCH3Q96II8 PRKG1-AS1-201ENST00000420193 971 ntTSL 3 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 AC012497.1-201ENST00000429392 575 ntBASIC17.12■□□□□ 0.33
LRCH3Q96II8 POM121L10P-201ENST00000436994 1285 ntBASIC17.12■□□□□ 0.33
LRCH3Q96II8 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 AC246817.2-203ENST00000517357 569 ntTSL 4 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 AC246817.2-202ENST00000519393 564 ntTSL 4 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 AC044849.1-201ENST00000519737 1188 ntBASIC17.12■□□□□ 0.33
LRCH3Q96II8 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LRCH3Q96II8 KBTBD4-203ENST00000525720 980 ntTSL 3 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 AL163636.1-201ENST00000554286 915 ntTSL 5 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 TMEM220-AS1-207ENST00000584714 541 ntTSL 4 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 SLC27A2-201ENST00000267842 2394 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRCH3Q96II8 SPAG6-202ENST00000376603 2770 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LRCH3Q96II8 SCARB2-223ENST00000640640 4608 ntTSL 5 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 AL357673.1-201ENST00000637610 2542 ntAPPRIS P5 TSL 5 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRCH3Q96II8 SH3PXD2B-203ENST00000519643 1394 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LRCH3Q96II8 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC17.12■□□□□ 0.33
LRCH3Q96II8 ATOH1-201ENST00000306011 2212 ntAPPRIS P1 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 HFE2-201ENST00000336751 2234 ntAPPRIS P1 TSL 2 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRCH3Q96II8 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 CYP51A1P3-201ENST00000400072 1428 ntBASIC17.12■□□□□ 0.33
LRCH3Q96II8 WASF1-202ENST00000359451 3075 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRCH3Q96II8 BRPF1-203ENST00000424362 4712 ntAPPRIS ALT1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRCH3Q96II8 SCAMP4-201ENST00000316097 2684 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
LRCH3Q96II8 LEF1-216ENST00000510624 1472 ntTSL 2 BASIC17.12■□□□□ 0.33
LRCH3Q96II8 KLHL31-201ENST00000370905 5743 ntAPPRIS P1 TSL 1 (best) BASIC17.12■□□□□ 0.33
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms