Protein–RNA interactions for Protein: Q96GC9

VMP1, Vacuole membrane protein 1, humanhuman

Predictions only

Length 406 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1Q96GC9 SSH3-203ENST00000376757 2990 ntTSL 2 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 TRIM67-202ENST00000444294 9320 ntAPPRIS ALT1 TSL 5 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 NFIX-214ENST00000592199 1509 ntTSL 5 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 RGS3-210ENST00000462143 2759 ntTSL 2 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 MYO3A-201ENST00000265944 5581 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 ADCY2-201ENST00000338316 6575 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 ZNF212-201ENST00000335870 2810 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 FUT2-201ENST00000391876 1593 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 CBSL-201ENST00000398168 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 STOML1-203ENST00000359750 984 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 FAM24B-201ENST00000368896 704 ntAPPRIS P1 TSL 2 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 GGCT-205ENST00000409436 954 ntTSL 3 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 PMS2P2-201ENST00000425039 1128 ntBASIC15.34■□□□□ 0.05
VMP1Q96GC9 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 LINC02558-202ENST00000436395 298 ntTSL 5 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 IGLL5-201ENST00000526893 1050 ntAPPRIS P2 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 IGLL5-202ENST00000531372 882 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 AL138781.1-202ENST00000563018 775 ntTSL 3 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 AP000842.3-202ENST00000569238 1080 ntBASIC15.34■□□□□ 0.05
VMP1Q96GC9 IFT20-215ENST00000585313 852 ntAPPRIS P4 TSL 3 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 AC073389.1-201ENST00000595595 795 ntBASIC15.34■□□□□ 0.05
VMP1Q96GC9 NKG7-205ENST00000600427 520 ntTSL 3 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 ITGB7-201ENST00000267082 2867 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 KCNS1-201ENST00000306117 4538 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 ARL8B-208ENST00000611208 2981 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 CGREF1-206ENST00000405600 1346 ntAPPRIS P2 TSL 4 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 TGIF1-205ENST00000401449 1670 ntTSL 2 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 SPATC1-201ENST00000377470 2007 ntAPPRIS P3 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 CIAPIN1-209ENST00000567518 2016 ntTSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 SNAP91-205ENST00000439399 4452 ntAPPRIS P2 TSL 5 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 GGT4P-201ENST00000623672 1708 ntBASIC15.34■□□□□ 0.05
VMP1Q96GC9 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 SYN1-202ENST00000340666 3172 ntAPPRIS ALT2 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 TBC1D3D-201ENST00000616101 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 TBC1D3K-201ENST00000620247 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 DMRTC2-201ENST00000269945 1792 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 AP005329.2-201ENST00000580139 1771 ntTSL 2 BASIC15.34■□□□□ 0.05
VMP1Q96GC9 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC15.34■□□□□ 0.05
VMP1Q96GC9 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.05
VMP1Q96GC9 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
VMP1Q96GC9 GRIK5-204ENST00000593562 3308 ntAPPRIS P1 TSL 5 BASIC15.33■□□□□ 0.05
VMP1Q96GC9 UBR2-201ENST00000372899 7857 ntAPPRIS P2 TSL 1 (best) BASIC15.33■□□□□ 0.05
VMP1Q96GC9 UBR2-202ENST00000372901 7857 ntAPPRIS ALT1 TSL 5 BASIC15.33■□□□□ 0.05
VMP1Q96GC9 TLE3-223ENST00000560939 3021 ntTSL 5 BASIC15.33■□□□□ 0.05
VMP1Q96GC9 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.05
VMP1Q96GC9 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC15.33■□□□□ 0.05
VMP1Q96GC9 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.05
VMP1Q96GC9 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC15.33■□□□□ 0.05
VMP1Q96GC9 ALOX12P2-203ENST00000570921 1945 ntBASIC15.33■□□□□ 0.05
VMP1Q96GC9 TTC28-AS1-219ENST00000454741 5064 ntTSL 1 (best) BASIC15.33■□□□□ 0.05
VMP1Q96GC9 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC15.33■□□□□ 0.04
VMP1Q96GC9 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
VMP1Q96GC9 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VMP1Q96GC9 TPBG-202ENST00000535040 3392 ntAPPRIS P1 TSL 2 BASIC15.33■□□□□ 0.04
VMP1Q96GC9 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VMP1Q96GC9 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VMP1Q96GC9 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VMP1Q96GC9 MIR346-201ENST00000362234 95 ntBASIC15.33■□□□□ 0.04
VMP1Q96GC9 TSSC4-202ENST00000380992 992 ntAPPRIS ALT2 TSL 5 BASIC15.33■□□□□ 0.04
VMP1Q96GC9 AP1S3-202ENST00000396653 589 ntTSL 4 BASIC15.33■□□□□ 0.04
VMP1Q96GC9 VMO1-203ENST00000416307 712 ntTSL 2 BASIC15.33■□□□□ 0.04
VMP1Q96GC9 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.33■□□□□ 0.04
VMP1Q96GC9 PON3-203ENST00000427422 894 ntTSL 3 BASIC15.33■□□□□ 0.04
VMP1Q96GC9 RANGRF-203ENST00000439238 1140 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VMP1Q96GC9 AP001471.1-201ENST00000454245 672 ntTSL 3 BASIC15.33■□□□□ 0.04
VMP1Q96GC9 HLA-J-203ENST00000494367 1087 ntBASIC15.33■□□□□ 0.04
VMP1Q96GC9 VASH2-211ENST00000517399 1068 ntAPPRIS ALT1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VMP1Q96GC9 AC004449.1-201ENST00000564240 433 ntBASIC15.33■□□□□ 0.04
VMP1Q96GC9 AL138918.1-201ENST00000568306 659 ntBASIC15.33■□□□□ 0.04
VMP1Q96GC9 LINC00628-201ENST00000628516 1289 ntBASIC15.33■□□□□ 0.04
VMP1Q96GC9 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC15.33■□□□□ 0.04
VMP1Q96GC9 DDX55-201ENST00000238146 2654 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VMP1Q96GC9 SLC26A1-202ENST00000398516 3109 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VMP1Q96GC9 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.33■□□□□ 0.04
VMP1Q96GC9 POLR2J4-203ENST00000326391 1422 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VMP1Q96GC9 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VMP1Q96GC9 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VMP1Q96GC9 NLGN4X-203ENST00000381093 5865 ntAPPRIS P2 TSL 2 BASIC15.33■□□□□ 0.04
VMP1Q96GC9 MROH6-201ENST00000398882 3469 ntAPPRIS P2 TSL 5 BASIC15.33■□□□□ 0.04
VMP1Q96GC9 SNX19-201ENST00000265909 6535 ntAPPRIS P1 TSL 1 (best) BASIC15.33■□□□□ 0.04
VMP1Q96GC9 SIRT6-201ENST00000305232 1506 ntTSL 1 (best) BASIC15.33■□□□□ 0.04
VMP1Q96GC9 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
VMP1Q96GC9 ABHD10-201ENST00000273359 2590 ntAPPRIS P1 TSL 1 (best) BASIC15.32■□□□□ 0.04
Retrieved 100 of 98,524 protein–RNA pairs in 33.4 ms