Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 POLR1D-220ENST00000637071 1943 ntTSL 5 BASIC15.76■□□□□ 0.11
TTC28Q96AY4 PYCR1-201ENST00000329875 1855 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TTC28Q96AY4 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TTC28Q96AY4 AC011474.1-201ENST00000582581 2582 ntTSL 2 BASIC15.76■□□□□ 0.11
TTC28Q96AY4 HNRNPM-217ENST00000620401 2458 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
TTC28Q96AY4 SNX17-210ENST00000537606 2400 ntTSL 2 BASIC15.76■□□□□ 0.11
TTC28Q96AY4 TFEB-201ENST00000230323 2354 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TTC28Q96AY4 GPN3-201ENST00000228827 1468 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TTC28Q96AY4 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TTC28Q96AY4 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TTC28Q96AY4 FAM90A7P-201ENST00000382628 1395 ntBASIC15.75■□□□□ 0.11
TTC28Q96AY4 FAM90A23P-201ENST00000400136 1395 ntBASIC15.75■□□□□ 0.11
TTC28Q96AY4 FAM90A21P-201ENST00000510875 1396 ntBASIC15.75■□□□□ 0.11
TTC28Q96AY4 FAM90A15P-201ENST00000514465 1395 ntBASIC15.75■□□□□ 0.11
TTC28Q96AY4 FAM90A6P-201ENST00000515148 1394 ntBASIC15.75■□□□□ 0.11
TTC28Q96AY4 FAM90A16P-201ENST00000526662 1395 ntBASIC15.75■□□□□ 0.11
TTC28Q96AY4 FAM90A9P-201ENST00000527940 1395 ntBASIC15.75■□□□□ 0.11
TTC28Q96AY4 FAM90A5P-201ENST00000528738 1395 ntBASIC15.75■□□□□ 0.11
TTC28Q96AY4 FAM90A14P-201ENST00000530386 1395 ntBASIC15.75■□□□□ 0.11
TTC28Q96AY4 FAM90A13P-201ENST00000534703 1395 ntBASIC15.75■□□□□ 0.11
TTC28Q96AY4 DYNLT1-201ENST00000367085 774 ntTSL 2 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 NQO2-202ENST00000380430 1098 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 HLA-J-204ENST00000495278 958 ntBASIC15.75■□□□□ 0.11
TTC28Q96AY4 AC012645.2-201ENST00000566190 553 ntTSL 4 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 C17orf62-216ENST00000578919 841 ntAPPRIS P1 TSL 3 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 MIR4472-1-201ENST00000584349 80 ntBASIC15.75■□□□□ 0.11
TTC28Q96AY4 ENPP7P14-201ENST00000621765 1040 ntBASIC15.75■□□□□ 0.11
TTC28Q96AY4 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TTC28Q96AY4 NOP56-201ENST00000329276 2400 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TTC28Q96AY4 AFG3L1P-203ENST00000418696 2965 ntTSL 2 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 PLCB3-204ENST00000540288 4469 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TTC28Q96AY4 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 BIRC8-201ENST00000426466 2026 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 CHTF18-202ENST00000317063 2988 ntAPPRIS ALT2 TSL 5 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TTC28Q96AY4 CMTM3-214ENST00000567572 1934 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TTC28Q96AY4 DIDO1-203ENST00000370366 2383 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TTC28Q96AY4 OSCP1-204ENST00000433045 1381 ntTSL 5 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 LINC01148-201ENST00000557527 1763 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TTC28Q96AY4 PSMC4-202ENST00000455878 1333 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TTC28Q96AY4 CUTA-203ENST00000374500 937 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TTC28Q96AY4 AL645933.1-201ENST00000440087 609 ntBASIC15.75■□□□□ 0.11
TTC28Q96AY4 AC010900.1-201ENST00000449849 1296 ntBASIC15.75■□□□□ 0.11
TTC28Q96AY4 IGKV1OR-2-201ENST00000457995 350 ntBASIC15.75■□□□□ 0.11
TTC28Q96AY4 AP000866.5-201ENST00000531241 445 ntTSL 5 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 AC051619.5-201ENST00000559003 736 ntTSL 2 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 AC011500.3-201ENST00000594676 647 ntTSL 4 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 MAGEA2-202ENST00000598543 1662 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TTC28Q96AY4 MAP6-201ENST00000304771 3334 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TTC28Q96AY4 SGK3-206ENST00000520976 2483 ntTSL 2 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 UBE3C-202ENST00000389103 1626 ntTSL 5 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TTC28Q96AY4 HMCN2-204ENST00000611173 1920 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TTC28Q96AY4 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TTC28Q96AY4 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 TMEM51-202ENST00000376014 1843 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
TTC28Q96AY4 LETM1P2-201ENST00000597330 2178 ntBASIC15.75■□□□□ 0.11
TTC28Q96AY4 NECAB2-203ENST00000565691 2064 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 AL513315.1-201ENST00000640756 1370 ntTSL 5 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 DNM3-203ENST00000367733 2322 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 PMF1-202ENST00000368277 1068 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 KRTAP10-3-201ENST00000391620 971 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 IZUMO1R-202ENST00000440961 805 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 AC092638.2-201ENST00000441105 947 ntBASIC15.74■□□□□ 0.11
TTC28Q96AY4 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 C17orf58-202ENST00000449250 1082 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 AL135901.1-201ENST00000451812 333 ntBASIC15.74■□□□□ 0.11
TTC28Q96AY4 C5orf63-203ENST00000509733 553 ntTSL 4 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 AC018846.1-201ENST00000568231 183 ntBASIC15.74■□□□□ 0.11
TTC28Q96AY4 AC136944.4-201ENST00000568893 660 ntTSL 4 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 PAM16-211ENST00000575848 518 ntTSL 3 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 PAM16-214ENST00000576217 493 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 MIR4683-201ENST00000579659 81 ntBASIC15.74■□□□□ 0.11
TTC28Q96AY4 AL078590.3-205ENST00000606039 465 ntTSL 5 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 CYB5R3-204ENST00000407332 1849 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 UMOD-202ENST00000396134 2408 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 GGT5-201ENST00000263112 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 SMO-201ENST00000249373 3738 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 PKP3-201ENST00000331563 2809 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 FOXI3-201ENST00000428390 2804 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 AL590627.1-201ENST00000626603 1910 ntTSL 2 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TTC28Q96AY4 AC087071.1-201ENST00000469264 427 ntTSL 2 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 WNT5A-205ENST00000497027 1299 ntTSL 2 BASIC15.74■□□□□ 0.11
TTC28Q96AY4 AP003065.1-201ENST00000540912 562 ntTSL 4 BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 48.4 ms