Protein–RNA interactions for Protein: Q969F9

HPS3, Hermansky-Pudlak syndrome 3 protein, humanhuman

Predictions only

Length 1,004 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HPS3Q969F9 GLMP-213ENST00000612353 1365 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
HPS3Q969F9 GLMP-215ENST00000622703 1364 ntAPPRIS ALT2 TSL 2 BASIC17.63■□□□□ 0.41
HPS3Q969F9 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC17.63■□□□□ 0.41
HPS3Q969F9 AC068580.4-201ENST00000636615 2228 ntAPPRIS ALT2 TSL 5 BASIC17.63■□□□□ 0.41
HPS3Q969F9 ACTL8-201ENST00000375406 1861 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HPS3Q969F9 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HPS3Q969F9 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC17.63■□□□□ 0.41
HPS3Q969F9 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC17.62■□□□□ 0.41
HPS3Q969F9 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HPS3Q969F9 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC17.62■□□□□ 0.41
HPS3Q969F9 GFOD2-203ENST00000602377 1991 ntTSL 4 BASIC17.62■□□□□ 0.41
HPS3Q969F9 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HPS3Q969F9 NFATC2-206ENST00000609943 5690 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HPS3Q969F9 GHDC-203ENST00000428494 2518 ntTSL 5 BASIC17.62■□□□□ 0.41
HPS3Q969F9 UVSSA-206ENST00000507531 2597 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HPS3Q969F9 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HPS3Q969F9 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC17.62■□□□□ 0.41
HPS3Q969F9 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC17.62■□□□□ 0.41
HPS3Q969F9 MDGA2-202ENST00000399232 5075 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HPS3Q969F9 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC17.62■□□□□ 0.41
HPS3Q969F9 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC17.62■□□□□ 0.41
HPS3Q969F9 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HPS3Q969F9 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
HPS3Q969F9 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC17.62■□□□□ 0.41
HPS3Q969F9 SNHG11-207ENST00000434729 1058 ntTSL 4 BASIC17.62■□□□□ 0.41
HPS3Q969F9 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC17.62■□□□□ 0.41
HPS3Q969F9 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC17.62■□□□□ 0.41
HPS3Q969F9 AC021744.1-201ENST00000518354 453 ntTSL 3 BASIC17.62■□□□□ 0.41
HPS3Q969F9 AC124067.2-201ENST00000521989 510 ntTSL 2 BASIC17.62■□□□□ 0.41
HPS3Q969F9 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC17.62■□□□□ 0.41
HPS3Q969F9 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HPS3Q969F9 NDRG4-247ENST00000568640 1281 ntTSL 2 BASIC17.62■□□□□ 0.41
HPS3Q969F9 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC17.62■□□□□ 0.41
HPS3Q969F9 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC17.62■□□□□ 0.41
HPS3Q969F9 ANXA8-203ENST00000583874 1860 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HPS3Q969F9 EIF2AK4-208ENST00000559624 3548 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
HPS3Q969F9 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HPS3Q969F9 SCLT1-204ENST00000503215 1364 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HPS3Q969F9 DNASE2-201ENST00000222219 1955 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HPS3Q969F9 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HPS3Q969F9 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
HPS3Q969F9 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC17.62■□□□□ 0.41
HPS3Q969F9 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
HPS3Q969F9 PCGF2-206ENST00000618941 1499 ntTSL 5 BASIC17.62■□□□□ 0.41
HPS3Q969F9 CRY2-201ENST00000417225 2053 ntTSL 2 BASIC17.62■□□□□ 0.41
HPS3Q969F9 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
HPS3Q969F9 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC17.62■□□□□ 0.41
HPS3Q969F9 ABHD18-202ENST00000398965 2177 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
HPS3Q969F9 AL607033.1-201ENST00000623900 1599 ntBASIC17.62■□□□□ 0.41
HPS3Q969F9 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
HPS3Q969F9 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
HPS3Q969F9 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HPS3Q969F9 WAC-203ENST00000354911 3042 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HPS3Q969F9 PABPC4-201ENST00000372856 3016 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HPS3Q969F9 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HPS3Q969F9 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HPS3Q969F9 MGME1-202ENST00000377709 1936 ntTSL 2 BASIC17.61■□□□□ 0.41
HPS3Q969F9 ZSWIM8-223ENST00000605216 6004 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HPS3Q969F9 TUB-AS1-201ENST00000506601 2021 ntTSL 2 BASIC17.61■□□□□ 0.41
HPS3Q969F9 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HPS3Q969F9 TAS2R41-201ENST00000408916 924 ntAPPRIS P1 BASIC17.61■□□□□ 0.41
HPS3Q969F9 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC17.61■□□□□ 0.41
HPS3Q969F9 AC106872.10-201ENST00000503778 747 ntTSL 3 BASIC17.61■□□□□ 0.41
HPS3Q969F9 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC17.61■□□□□ 0.41
HPS3Q969F9 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC17.61■□□□□ 0.41
HPS3Q969F9 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HPS3Q969F9 AL079307.3-201ENST00000556114 283 ntBASIC17.61■□□□□ 0.41
HPS3Q969F9 GNG2-213ENST00000556766 2125 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HPS3Q969F9 TGIF2-C20orf24-201ENST00000558530 918 ntAPPRIS P1 TSL 3 BASIC17.61■□□□□ 0.41
HPS3Q969F9 SPIB-207ENST00000597855 564 ntTSL 4 BASIC17.61■□□□□ 0.41
HPS3Q969F9 AQP12B-206ENST00000621682 1080 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
HPS3Q969F9 TSPY26P-202ENST00000565928 3884 ntBASIC17.61■□□□□ 0.41
HPS3Q969F9 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HPS3Q969F9 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC17.61■□□□□ 0.41
HPS3Q969F9 ACOX3-202ENST00000413009 2374 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
HPS3Q969F9 PDS5A-201ENST00000303538 7176 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HPS3Q969F9 BRD3-201ENST00000303407 5652 ntAPPRIS P2 TSL 1 (best) BASIC17.61■□□□□ 0.41
HPS3Q969F9 MCF2L2-208ENST00000473233 4748 ntAPPRIS ALT2 TSL 5 BASIC17.61■□□□□ 0.41
HPS3Q969F9 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC17.61■□□□□ 0.41
HPS3Q969F9 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC17.61■□□□□ 0.41
HPS3Q969F9 AEN-201ENST00000332810 3117 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
HPS3Q969F9 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC17.6■□□□□ 0.41
HPS3Q969F9 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 RNPS1-220ENST00000566458 2037 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.6■□□□□ 0.41
HPS3Q969F9 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC17.6■□□□□ 0.41
HPS3Q969F9 AL596257.1-201ENST00000641463 2694 ntBASIC17.6■□□□□ 0.41
HPS3Q969F9 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 KLK8-202ENST00000320838 456 ntTSL 5 BASIC17.6■□□□□ 0.41
HPS3Q969F9 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 CSHL1-204ENST00000392824 823 ntAPPRIS ALT1 TSL 1 (best) BASIC17.6■□□□□ 0.41
HPS3Q969F9 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC17.6■□□□□ 0.41
HPS3Q969F9 SPDYE17-201ENST00000412399 783 ntBASIC17.6■□□□□ 0.41
HPS3Q969F9 RPL37AP1-201ENST00000412502 279 ntBASIC17.6■□□□□ 0.41
HPS3Q969F9 SNHG17-203ENST00000417578 880 ntTSL 2 BASIC17.6■□□□□ 0.41
HPS3Q969F9 SPDYE7P-202ENST00000420373 878 ntBASIC17.6■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 32.3 ms