Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 E2F6-202ENST00000381525 3218 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 RAB2A-201ENST00000262646 3848 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 GGT1-204ENST00000401885 968 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 NPY-203ENST00000407573 705 ntAPPRIS P1 TSL 3 BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 VPS13A-AS1-201ENST00000415172 519 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 NUS1P2-201ENST00000417358 873 ntBASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 AL645608.6-201ENST00000418300 402 ntTSL 3 BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 C9orf147-204ENST00000463223 863 ntTSL 3 BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 RPL28-210ENST00000560583 1204 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 CCDC61-202ENST00000594087 1017 ntAPPRIS ALT2 TSL 5 BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 TMED9-201ENST00000332598 1473 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 MAPK7-204ENST00000395604 3077 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 LANCL2-201ENST00000254770 4353 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 FSIP1-201ENST00000350221 2805 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 FARP1-214ENST00000595437 4926 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 SCYL1-201ENST00000270176 2642 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 GSN-215ENST00000545652 2428 ntTSL 2 BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 MAIP1-202ENST00000392290 1386 ntAPPRIS P2 TSL 1 (best) BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC17.66■□□□□ 0.42
CCDC112Q8NEF3 LYSMD4-204ENST00000409796 2672 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 AL591845.1-201ENST00000373137 1838 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 AC091951.1-201ENST00000512854 2465 ntBASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 AC005840.4-201ENST00000541242 2494 ntBASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 ZDHHC3-201ENST00000296127 3101 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 CICP14-201ENST00000629111 2732 ntBASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 ARFIP2-203ENST00000423813 1430 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 UHRF1BP1-202ENST00000452449 4706 ntAPPRIS ALT2 TSL 5 BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 B4GALNT3-201ENST00000266383 5068 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 RABL2B-209ENST00000435118 1126 ntAPPRIS P3 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 MPI-205ENST00000562606 1052 ntTSL 3 BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 AC091304.2-201ENST00000564639 760 ntBASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 FLT3LG-206ENST00000597551 951 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 ZSCAN1-203ENST00000601162 813 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 AC099336.1-202ENST00000602961 463 ntBASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 PNPLA3-203ENST00000423180 2222 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 ARHGAP27P1-BPTFP1-KPNA2P3-201ENST00000578492 2732 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 AC013726.1-201ENST00000563747 2285 ntBASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 ZDHHC4-206ENST00000405731 1348 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 NUP62-212ENST00000597723 1824 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 MARS-233ENST00000628866 2583 ntTSL 5 BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 EIF3J-AS1-201ENST00000313807 2863 ntTSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 TM2D3-201ENST00000333202 1381 ntAPPRIS P4 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 C2orf48-201ENST00000381786 1897 ntTSL 2 BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 SMARCA4-214ENST00000589677 5181 ntAPPRIS ALT1 TSL 5 BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 DBF4-201ENST00000265728 3907 ntAPPRIS P1 TSL 1 (best) BASIC17.65■□□□□ 0.42
CCDC112Q8NEF3 KCNK4-TEX40-201ENST00000539086 2733 ntTSL 1 (best) BASIC17.64■□□□□ 0.42
CCDC112Q8NEF3 ASTN2-206ENST00000361477 4001 ntTSL 5 BASIC17.64■□□□□ 0.42
CCDC112Q8NEF3 PPFIA3-203ENST00000602351 4341 ntTSL 5 BASIC17.64■□□□□ 0.42
CCDC112Q8NEF3 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 RUSC1-209ENST00000471876 1749 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 BTG3-202ENST00000348354 1456 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 TP53I11-201ENST00000308212 3683 ntAPPRIS P1 TSL 5 BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 KCP-203ENST00000610776 5108 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 COQ6-220ENST00000629426 1538 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 PARN-202ENST00000420015 2360 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 MCRIP2-201ENST00000307650 946 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 CREM-211ENST00000374726 1207 ntTSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 ITM2C-204ENST00000409704 1106 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 AC105202.1-201ENST00000517833 995 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 MPP2-208ENST00000520305 2111 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 LINC00596-201ENST00000559615 937 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 IFNL4P1-201ENST00000607083 540 ntBASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 AMPD2-218ENST00000528454 2728 ntTSL 2 BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC17.64■□□□□ 0.41
CCDC112Q8NEF3 BMP1-203ENST00000354870 3989 ntTSL 5 BASIC17.64■□□□□ 0.41
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms