Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 LRCOL1-201ENST00000376608 778 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 AL161908.2-201ENST00000457964 394 ntTSL 2 BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 AC092910.3-202ENST00000469070 982 ntTSL 3 BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 SDHAP3-202ENST00000515467 728 ntBASIC16.3■□□□□ 0.2
RTL3Q8N8U3 RNA5SP421-201ENST00000516864 134 ntBASIC16.3■□□□□ 0.2
RTL3Q8N8U3 AC124067.4-202ENST00000522471 397 ntTSL 3 BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 AL161757.4-201ENST00000554149 621 ntTSL 3 BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 AC044860.1-202ENST00000559481 777 ntBASIC16.3■□□□□ 0.2
RTL3Q8N8U3 AC009407.1-201ENST00000568958 598 ntBASIC16.3■□□□□ 0.2
RTL3Q8N8U3 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 SURF4-208ENST00000613129 3148 ntTSL 2 BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 SLC4A3-201ENST00000273063 4246 ntTSL 1 (best) BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC16.3■□□□□ 0.2
RTL3Q8N8U3 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 MEGF6-201ENST00000294599 4501 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 STAT5A-201ENST00000345506 4301 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 ZBTB46-201ENST00000245663 5185 ntAPPRIS P1 TSL 5 BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 MPPE1-211ENST00000588072 4236 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 ARHGEF16-202ENST00000378373 2211 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 RPL3L-201ENST00000268661 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 ZSCAN2-205ENST00000379358 906 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 AL512638.1-201ENST00000457493 794 ntBASIC16.29■□□□□ 0.2
RTL3Q8N8U3 AL161781.2-201ENST00000509911 739 ntTSL 2 BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 RAB30-AS1-207ENST00000533708 825 ntTSL 2 BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 AC074044.1-201ENST00000609673 707 ntBASIC16.29■□□□□ 0.2
RTL3Q8N8U3 AL109936.8-201ENST00000641772 604 ntBASIC16.29■□□□□ 0.2
RTL3Q8N8U3 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 CCNA2-201ENST00000274026 2797 ntAPPRIS P1 TSL 1 (best) BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 AC022144.1-201ENST00000602255 1580 ntBASIC16.29■□□□□ 0.2
RTL3Q8N8U3 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.29■□□□□ 0.2
RTL3Q8N8U3 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 NBPF15-202ENST00000488031 4535 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 HIC2-201ENST00000407464 6798 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 INPP5B-201ENST00000373021 3934 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 SIKE1-203ENST00000369528 5506 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 SPDYC-201ENST00000377185 991 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 COLEC11-205ENST00000402922 1134 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 SYS1-203ENST00000414310 795 ntTSL 3 BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 AC074338.1-201ENST00000416825 156 ntBASIC16.28■□□□□ 0.2
RTL3Q8N8U3 RAD18-204ENST00000418463 563 ntTSL 4 BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 RAD18-205ENST00000421052 582 ntTSL 3 BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 FOLR3-201ENST00000442948 805 ntTSL 5 BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 MDH2-205ENST00000461263 648 ntTSL 2 BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 RNF24-204ENST00000545616 1128 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 AL355385.1-201ENST00000606123 409 ntBASIC16.28■□□□□ 0.2
RTL3Q8N8U3 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 DENR-201ENST00000280557 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 SGSH-203ENST00000570923 1546 ntTSL 2 BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 HMGA2-210ENST00000541363 8094 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 RAB40B-206ENST00000571995 3859 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 BTBD7P1-201ENST00000447253 1453 ntBASIC16.28■□□□□ 0.2
RTL3Q8N8U3 SLC4A3-204ENST00000373760 4134 ntAPPRIS P1 TSL 5 BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 C12orf29-201ENST00000356891 2919 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 HLA-DQB2-231ENST00000435145 2026 ntBASIC16.28■□□□□ 0.2
RTL3Q8N8U3 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 PRKAR2B-201ENST00000265717 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.28■□□□□ 0.2
RTL3Q8N8U3 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.27■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms