Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 HELZ2-202ENST00000427522 7827 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
BEST3Q8N1M1 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC14.83□□□□□ -0.04
BEST3Q8N1M1 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC14.83□□□□□ -0.04
BEST3Q8N1M1 CACNA2D3-201ENST00000288197 3671 ntAPPRIS ALT2 TSL 1 (best) BASIC14.83□□□□□ -0.04
BEST3Q8N1M1 CACNA2D3-206ENST00000474759 3675 ntAPPRIS P2 TSL 1 (best) BASIC14.83□□□□□ -0.04
BEST3Q8N1M1 ASXL1-210ENST00000613218 7038 ntAPPRIS ALT2 TSL 5 BASIC14.83□□□□□ -0.04
BEST3Q8N1M1 SH2B1-203ENST00000359285 3033 ntTSL 1 (best) BASIC14.83□□□□□ -0.04
BEST3Q8N1M1 AC079328.2-201ENST00000561241 3354 ntBASIC14.83□□□□□ -0.04
BEST3Q8N1M1 VIPR1-204ENST00000438259 2427 ntTSL 2 BASIC14.83□□□□□ -0.04
BEST3Q8N1M1 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
BEST3Q8N1M1 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
BEST3Q8N1M1 AC126755.1-201ENST00000525846 6405 ntBASIC14.83□□□□□ -0.04
BEST3Q8N1M1 MYB-201ENST00000316528 3571 ntTSL 5 BASIC14.83□□□□□ -0.04
BEST3Q8N1M1 MYB-241ENST00000616088 3573 ntTSL 5 BASIC14.83□□□□□ -0.04
BEST3Q8N1M1 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.83□□□□□ -0.04
BEST3Q8N1M1 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 PLPPR4-203ENST00000457765 4846 ntTSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 PPP1R21-206ENST00000449090 3049 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 UGT3A2-204ENST00000513300 1924 ntTSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 CCDC40-201ENST00000269318 1970 ntTSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 ZNF805-201ENST00000354309 2396 ntTSL 5 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 SNAI2-201ENST00000020945 2010 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 NORAD-201ENST00000565493 5339 ntBASIC14.82□□□□□ -0.04
BEST3Q8N1M1 ANKHD1-EIF4EBP3-203ENST00000532219 8246 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 AQP1-204ENST00000441328 2487 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 LINC00323-202ENST00000441268 2095 ntTSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 KEAP1-201ENST00000171111 2955 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 CIDEA-201ENST00000320477 828 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 WBP2-203ENST00000433525 928 ntTSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 RASL12-203ENST00000434605 982 ntTSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 AL451067.1-201ENST00000453111 394 ntTSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 SPDYE18-201ENST00000510091 1050 ntBASIC14.82□□□□□ -0.04
BEST3Q8N1M1 NUBP2-208ENST00000565987 1049 ntTSL 5 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 VAT1-205ENST00000587173 1174 ntTSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 AC005523.1-201ENST00000598782 418 ntTSL 5 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 TEX48-202ENST00000612244 662 ntTSL 3 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 AL358472.5-202ENST00000641448 1267 ntBASIC14.82□□□□□ -0.04
BEST3Q8N1M1 DYNLL2-201ENST00000579991 6805 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 CCT2-202ENST00000543146 2189 ntTSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 SDC4-201ENST00000372733 2613 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 MASTL-203ENST00000375946 3623 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 DLG4-202ENST00000399506 3185 ntAPPRIS ALT1 TSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 B3GNT4-206ENST00000546192 2749 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 SENP1-204ENST00000549518 2260 ntAPPRIS P2 TSL 1 (best) BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 UBAP1L-201ENST00000502113 1381 ntAPPRIS P1 TSL 5 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 PMS1-212ENST00000432292 3234 ntTSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 TXNDC2-201ENST00000306084 1873 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 YTHDF1-202ENST00000370339 3301 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 AC002310.1-201ENST00000457283 1445 ntTSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 TRAPPC11-202ENST00000357207 4435 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 AVL9-201ENST00000318709 6982 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 LINC02370-201ENST00000428272 2009 ntTSL 5 BASIC14.82□□□□□ -0.04
BEST3Q8N1M1 RIC8B-213ENST00000638198 1611 ntTSL 5 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 SLC25A45-201ENST00000294187 2196 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 ASAP3-212ENST00000618240 2226 ntTSL 5 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 SUV39H1-202ENST00000376687 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 CHAD-203ENST00000508540 1789 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 CALHM2-202ENST00000369788 1843 ntAPPRIS P1 TSL 2 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 BID-201ENST00000317361 2495 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 PDZD4-202ENST00000393758 3763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 SPAG7-201ENST00000206020 1058 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 SPDYE19P-201ENST00000338590 713 ntBASIC14.81□□□□□ -0.04
BEST3Q8N1M1 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 AC114501.2-201ENST00000439631 535 ntBASIC14.81□□□□□ -0.04
BEST3Q8N1M1 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 RN7SL692P-201ENST00000464677 288 ntBASIC14.81□□□□□ -0.04
BEST3Q8N1M1 DOC2GP-202ENST00000514950 1163 ntBASIC14.81□□□□□ -0.04
BEST3Q8N1M1 SDHAP3-202ENST00000515467 728 ntBASIC14.81□□□□□ -0.04
BEST3Q8N1M1 FAM92A-214ENST00000522324 1072 ntTSL 2 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 AC004790.1-201ENST00000612686 536 ntBASIC14.81□□□□□ -0.04
BEST3Q8N1M1 Metazoa_SRP.112-201ENST00000613101 279 ntBASIC14.81□□□□□ -0.04
BEST3Q8N1M1 AL109936.8-201ENST00000641772 604 ntBASIC14.81□□□□□ -0.04
BEST3Q8N1M1 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 SULT1A2-204ENST00000533150 1991 ntTSL 2 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 NUDT16-203ENST00000537561 5943 ntTSL 5 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 AC063926.2-201ENST00000623766 1308 ntBASIC14.81□□□□□ -0.04
BEST3Q8N1M1 PDE4C-207ENST00000594617 4655 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
BEST3Q8N1M1 AC007381.1-201ENST00000457668 2005 ntTSL 5 BASIC14.81□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 30.4 ms