Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 RCC2-202ENST00000375436 4087 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 SLA2-202ENST00000360672 2171 ntTSL 5 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 CXCL12-206ENST00000395795 404 ntTSL 5 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 FO393414.2-201ENST00000405153 598 ntBASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 LINC02447-202ENST00000501888 2146 ntBASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 TSC22D3-213ENST00000506081 956 ntTSL 5 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 IGHV3-42-201ENST00000520410 361 ntBASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 AL583722.3-202ENST00000554954 486 ntTSL 4 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 ZNF667-AS1-204ENST00000588158 921 ntTSL 3 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 AL138828.2-201ENST00000615812 383 ntBASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 LILRA2-208ENST00000629481 661 ntTSL 2 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 COL4A1-204ENST00000543140 2547 ntTSL 1 (best) BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 AP001781.3-201ENST00000622211 2939 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 EPHB4-201ENST00000358173 4329 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 AC007950.2-201ENST00000615045 2347 ntBASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 FOXE1-201ENST00000375123 3462 ntAPPRIS P1 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 SHROOM4-201ENST00000289292 6261 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 AMZ1-201ENST00000312371 5516 ntAPPRIS P1 TSL 1 (best) BASIC14.76□□□□□ -0.05
NUP54Q7Z3B4 AADAT-208ENST00000515480 2193 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 TSPEAR-202ENST00000397916 2114 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 COL4A3BP-204ENST00000405807 2843 ntAPPRIS P1 TSL 5 BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 ACAT2-201ENST00000367048 3180 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 UNC5D-203ENST00000416672 3532 ntAPPRIS ALT2 TSL 5 BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 NBEA-201ENST00000310336 10794 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 NDRG2-211ENST00000397858 2054 ntAPPRIS P4 TSL 5 BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 ZFPL1-201ENST00000294258 1371 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 SNX6-202ENST00000396526 3398 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 HNRNPH3-202ENST00000354695 1332 ntAPPRIS ALT1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 CHSY3-201ENST00000305031 3850 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 LRRC28-202ENST00000331450 752 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 NECTIN1-202ENST00000340882 1059 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 RPL37AP1-201ENST00000412502 279 ntBASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 AC092580.3-201ENST00000430932 139 ntBASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 NAGK-205ENST00000443938 1221 ntAPPRIS ALT1 TSL 5 BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 SERBP1P3-201ENST00000459980 809 ntBASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 AC007406.4-201ENST00000539568 765 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 DUT-210ENST00000559935 569 ntTSL 3 BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 SPDYE12P-201ENST00000618416 771 ntBASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 PDCD2-208ENST00000541970 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 KRT8P37-201ENST00000451609 1420 ntBASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC14.75□□□□□ -0.05
NUP54Q7Z3B4 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 PRMT1-217ENST00000532489 1686 ntTSL 5 BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 MYH6-201ENST00000356287 5871 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 BNIP3P1-202ENST00000550043 1585 ntBASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 USE1-201ENST00000263897 843 ntAPPRIS P2 TSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
NUP54Q7Z3B4 RETN-202ENST00000381324 249 ntTSL 1 (best) BASIC14.74□□□□□ -0.05
Retrieved 100 of 98,524 protein–RNA pairs in 39.8 ms