Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 SFTPA2-201ENST00000372325 2189 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 ANKK1-201ENST00000303941 2543 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HDAC4P56524 COL26A1-201ENST00000313669 3033 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 NR4A3-204ENST00000618101 5706 ntAPPRIS P4 TSL 5 BASIC16.65■□□□□ 0.26
HDAC4P56524 CNOT3-204ENST00000447684 2765 ntTSL 2 BASIC16.65■□□□□ 0.26
HDAC4P56524 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC16.65■□□□□ 0.26
HDAC4P56524 RWDD3-201ENST00000263893 1078 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 POLR1C-201ENST00000304004 1280 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 UGGT2-202ENST00000376714 1233 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 ASMT-201ENST00000381229 1087 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 NT5DC3-201ENST00000392876 7207 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 RAB17-204ENST00000409822 1077 ntTSL 5 BASIC16.65■□□□□ 0.26
HDAC4P56524 TMEM191A-202ENST00000419950 663 ntTSL 3 BASIC16.65■□□□□ 0.26
HDAC4P56524 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 SATB1-217ENST00000493952 626 ntTSL 3 BASIC16.65■□□□□ 0.26
HDAC4P56524 LINC01089-211ENST00000543334 1282 ntTSL 4 BASIC16.65■□□□□ 0.26
HDAC4P56524 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.65■□□□□ 0.26
HDAC4P56524 AC004449.1-201ENST00000564240 433 ntBASIC16.65■□□□□ 0.26
HDAC4P56524 TIMM13-202ENST00000591871 631 ntTSL 5 BASIC16.65■□□□□ 0.26
HDAC4P56524 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.65■□□□□ 0.26
HDAC4P56524 WNT1-202ENST00000613114 1278 ntTSL 5 BASIC16.65■□□□□ 0.26
HDAC4P56524 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.65■□□□□ 0.26
HDAC4P56524 UGGT2-212ENST00000621375 1004 ntTSL 5 BASIC16.65■□□□□ 0.26
HDAC4P56524 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 GAS2L2-201ENST00000604063 2661 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
HDAC4P56524 ARHGAP5-205ENST00000433497 3047 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 ATG2A-203ENST00000421419 1481 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC16.65■□□□□ 0.26
HDAC4P56524 FAM104A-202ENST00000405159 2865 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 KRT18P28-201ENST00000453838 1332 ntBASIC16.65■□□□□ 0.26
HDAC4P56524 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.65■□□□□ 0.26
HDAC4P56524 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 VILL-207ENST00000465644 1857 ntTSL 5 BASIC16.65■□□□□ 0.26
HDAC4P56524 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC16.65■□□□□ 0.26
HDAC4P56524 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC16.65■□□□□ 0.26
HDAC4P56524 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 PRICKLE1-211ENST00000639566 3341 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
HDAC4P56524 RAP2C-201ENST00000342983 3896 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 STK4-AS1-201ENST00000434401 2065 ntTSL 2 BASIC16.65■□□□□ 0.26
HDAC4P56524 ST14-201ENST00000278742 3539 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
HDAC4P56524 APLN-201ENST00000429967 3205 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
HDAC4P56524 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 NPM1-201ENST00000296930 1758 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC16.64■□□□□ 0.25
HDAC4P56524 PRX-201ENST00000291825 5502 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
HDAC4P56524 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
HDAC4P56524 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC16.64■□□□□ 0.25
HDAC4P56524 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 NHS-201ENST00000380060 8761 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 IQCF5-AS1-201ENST00000440723 2000 ntTSL 2 BASIC16.64■□□□□ 0.25
HDAC4P56524 TCAF2P1-201ENST00000291129 2421 ntBASIC16.64■□□□□ 0.25
HDAC4P56524 ASAH1-201ENST00000262097 2618 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 RPS19-201ENST00000221975 500 ntTSL 3 BASIC16.64■□□□□ 0.25
HDAC4P56524 KLK8-202ENST00000320838 456 ntTSL 5 BASIC16.64■□□□□ 0.25
HDAC4P56524 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 LBH-203ENST00000404397 543 ntTSL 4 BASIC16.64■□□□□ 0.25
HDAC4P56524 AC007388.1-210ENST00000415640 458 ntTSL 3 BASIC16.64■□□□□ 0.25
HDAC4P56524 CDH23-AS1-201ENST00000428918 378 ntTSL 2 BASIC16.64■□□□□ 0.25
HDAC4P56524 HIST3H2BA-201ENST00000436555 524 ntBASIC16.64■□□□□ 0.25
HDAC4P56524 AL732437.1-201ENST00000442008 595 ntTSL 4 BASIC16.64■□□□□ 0.25
HDAC4P56524 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.64■□□□□ 0.25
HDAC4P56524 CNN2P2-201ENST00000443536 909 ntBASIC16.64■□□□□ 0.25
HDAC4P56524 C2orf88-205ENST00000443551 692 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 CNN2P3-201ENST00000450201 906 ntBASIC16.64■□□□□ 0.25
HDAC4P56524 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 BEST1-205ENST00000526988 1263 ntTSL 2 BASIC16.64■□□□□ 0.25
HDAC4P56524 OBP2A-206ENST00000539850 914 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
HDAC4P56524 AC025678.2-201ENST00000562061 970 ntBASIC16.64■□□□□ 0.25
HDAC4P56524 AC051619.7-201ENST00000568314 623 ntBASIC16.64■□□□□ 0.25
HDAC4P56524 AC004408.1-201ENST00000579256 573 ntTSL 4 BASIC16.64■□□□□ 0.25
HDAC4P56524 RPS19-202ENST00000593863 526 ntAPPRIS P1 TSL 3 BASIC16.64■□□□□ 0.25
HDAC4P56524 AC026803.2-201ENST00000599784 819 ntTSL 3 BASIC16.64■□□□□ 0.25
HDAC4P56524 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC16.64■□□□□ 0.25
HDAC4P56524 AL136317.3-201ENST00000618497 906 ntBASIC16.64■□□□□ 0.25
HDAC4P56524 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 CRY1-201ENST00000008527 3267 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC16.64■□□□□ 0.25
HDAC4P56524 CNPY4-201ENST00000262932 1502 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 IMPDH1P4-201ENST00000445028 1534 ntBASIC16.64■□□□□ 0.25
HDAC4P56524 LSS-205ENST00000457828 4390 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
HDAC4P56524 UNC119B-201ENST00000344651 4404 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
HDAC4P56524 BCL11A-201ENST00000335712 5942 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 CTDSP1-201ENST00000273062 2638 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 TFPI2-201ENST00000222543 2444 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
HDAC4P56524 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC16.63■□□□□ 0.25
HDAC4P56524 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC16.63■□□□□ 0.25
HDAC4P56524 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 KCNC2-209ENST00000550433 2931 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 CDIP1-209ENST00000567695 2062 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 SNCAIP-202ENST00000261368 3745 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
HDAC4P56524 FLII-221ENST00000578558 2377 ntTSL 5 BASIC16.63■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 69.6 ms