Protein–RNA interactions for Protein: P55072

VCP, Transitional endoplasmic reticulum ATPase, humanhuman

Known RBP Predictions only

Length 806 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCPP55072 VWA2-203ENST00000603594 2600 ntTSL 2 BASIC17.08■□□□□ 0.32
VCPP55072 TUBB4A-201ENST00000264071 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCPP55072 RALGPS1-203ENST00000373434 2466 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VCPP55072 FZD4-201ENST00000531380 7383 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCPP55072 FES-207ENST00000444422 2266 ntTSL 1 (best) BASIC17.08■□□□□ 0.32
VCPP55072 TLE2-203ENST00000443826 2238 ntTSL 2 BASIC17.08■□□□□ 0.32
VCPP55072 MINDY1-202ENST00000361738 1961 ntTSL 2 BASIC17.08■□□□□ 0.32
VCPP55072 CDC25C-207ENST00000513970 1968 ntAPPRIS P1 TSL 2 BASIC17.08■□□□□ 0.32
VCPP55072 PHTF1-205ENST00000393357 3244 ntAPPRIS P1 TSL 1 (best) BASIC17.08■□□□□ 0.32
VCPP55072 SYBU-209ENST00000446070 2919 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC17.07■□□□□ 0.32
VCPP55072 AC098591.1-201ENST00000381811 1613 ntTSL 2 BASIC17.07■□□□□ 0.32
VCPP55072 PRMT6-201ENST00000370078 2616 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
VCPP55072 TFAP2B-202ENST00000393655 5773 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 C1RL-210ENST00000544702 1569 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 WDR45B-201ENST00000392325 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 MXI1-202ENST00000332674 3470 ntAPPRIS P4 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 SNRPN-201ENST00000346403 1304 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
VCPP55072 PPM1D-201ENST00000305921 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 NDUFB7-201ENST00000215565 531 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 STK39-201ENST00000355999 3820 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 CDKN1A-202ENST00000373711 793 ntAPPRIS P1 TSL 5 BASIC17.07■□□□□ 0.32
VCPP55072 IDH3B-202ENST00000380851 1230 ntAPPRIS ALT1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 IGHV3-23-201ENST00000390609 432 ntAPPRIS P1 BASIC17.07■□□□□ 0.32
VCPP55072 LINC00398-201ENST00000414407 906 ntTSL 2 BASIC17.07■□□□□ 0.32
VCPP55072 AC080129.2-201ENST00000418353 430 ntTSL 3 BASIC17.07■□□□□ 0.32
VCPP55072 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC17.07■□□□□ 0.32
VCPP55072 BCYRN1-201ENST00000418539 200 ntBASIC17.07■□□□□ 0.32
VCPP55072 AC142381.1-201ENST00000426099 345 ntBASIC17.07■□□□□ 0.32
VCPP55072 GGTLC2-202ENST00000448514 678 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 ATP6V0E2-AS1-201ENST00000461019 2973 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 PRYP6-201ENST00000514804 343 ntBASIC17.07■□□□□ 0.32
VCPP55072 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 RPL28-206ENST00000558752 671 ntTSL 3 BASIC17.07■□□□□ 0.32
VCPP55072 TMEM97-205ENST00000583381 578 ntTSL 4 BASIC17.07■□□□□ 0.32
VCPP55072 RPS15-212ENST00000593052 629 ntTSL 2 BASIC17.07■□□□□ 0.32
VCPP55072 AC004597.1-201ENST00000595525 561 ntTSL 4 BASIC17.07■□□□□ 0.32
VCPP55072 MIR6787-201ENST00000616675 61 ntBASIC17.07■□□□□ 0.32
VCPP55072 RAB34-223ENST00000636154 730 ntTSL 2 BASIC17.07■□□□□ 0.32
VCPP55072 MON2-213ENST00000552738 5543 ntTSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC17.07■□□□□ 0.32
VCPP55072 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
VCPP55072 STK24-203ENST00000397517 4578 ntTSL 2 BASIC17.07■□□□□ 0.32
VCPP55072 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 RAI1-207ENST00000640861 5172 ntTSL 5 BASIC17.07■□□□□ 0.32
VCPP55072 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC17.07■□□□□ 0.32
VCPP55072 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC17.07■□□□□ 0.32
VCPP55072 MAP2K5-201ENST00000178640 2347 ntAPPRIS P1 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC17.07■□□□□ 0.32
VCPP55072 AADAT-201ENST00000337664 2261 ntAPPRIS P3 TSL 1 (best) BASIC17.07■□□□□ 0.32
VCPP55072 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC17.07■□□□□ 0.32
VCPP55072 STARD7-201ENST00000337288 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 RAB9A-202ENST00000464506 2039 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 SLC9A2-201ENST00000233969 5410 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 BORCS8-MEF2B-203ENST00000514819 1406 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
VCPP55072 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
VCPP55072 AC087499.5-201ENST00000452760 1342 ntBASIC17.06■□□□□ 0.32
VCPP55072 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 UPK3B-202ENST00000334348 2373 ntAPPRIS ALT2 TSL 2 BASIC17.06■□□□□ 0.32
VCPP55072 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
VCPP55072 KIAA0907-201ENST00000368319 1155 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 DPM2-202ENST00000373110 738 ntTSL 2 BASIC17.06■□□□□ 0.32
VCPP55072 SNRPB-201ENST00000381342 1154 ntAPPRIS ALT1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 RPL28-204ENST00000431533 590 ntTSL 2 BASIC17.06■□□□□ 0.32
VCPP55072 RHOXF1P1-201ENST00000454625 772 ntTSL 3 BASIC17.06■□□□□ 0.32
VCPP55072 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC17.06■□□□□ 0.32
VCPP55072 AC019257.1-202ENST00000521498 445 ntTSL 5 BASIC17.06■□□□□ 0.32
VCPP55072 AC010336.6-201ENST00000595107 528 ntTSL 4 BASIC17.06■□□□□ 0.32
VCPP55072 KLK15-204ENST00000598239 855 ntAPPRIS P3 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 TEX28P1-201ENST00000613479 1221 ntBASIC17.06■□□□□ 0.32
VCPP55072 HIST1H3I-201ENST00000616365 411 ntAPPRIS P1 BASIC17.06■□□□□ 0.32
VCPP55072 TEX28P2-201ENST00000617764 1221 ntBASIC17.06■□□□□ 0.32
VCPP55072 COX11-210ENST00000639671 696 ntBASIC17.06■□□□□ 0.32
VCPP55072 CXCL14-202ENST00000512158 1760 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 SOX30-202ENST00000311371 2716 ntAPPRIS ALT2 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 AJ239322.1-201ENST00000419362 2209 ntTSL 2 BASIC17.06■□□□□ 0.32
VCPP55072 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 ZNF789-201ENST00000331410 1654 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 TICAM2-201ENST00000427199 3049 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 TLL1-204ENST00000507499 4818 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 AC097376.2-201ENST00000608661 2510 ntTSL 5 BASIC17.06■□□□□ 0.32
VCPP55072 NUP58-201ENST00000381718 2489 ntAPPRIS ALT1 TSL 2 BASIC17.06■□□□□ 0.32
VCPP55072 GFY-202ENST00000610896 1557 ntAPPRIS P1 TSL 2 BASIC17.06■□□□□ 0.32
VCPP55072 SPAG9-205ENST00000505279 4659 ntTSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 SUPT20HL2-201ENST00000486479 2409 ntBASIC17.06■□□□□ 0.32
VCPP55072 CCDC59-201ENST00000256151 1983 ntAPPRIS P1 TSL 1 (best) BASIC17.06■□□□□ 0.32
VCPP55072 DACT1-202ENST00000395153 3734 ntAPPRIS ALT2 TSL 5 BASIC17.06■□□□□ 0.32
VCPP55072 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC17.06■□□□□ 0.32
Retrieved 100 of 98,524 protein–RNA pairs in 57.8 ms