Protein–RNA interactions for Protein: P49238

CX3CR1, CX3C chemokine receptor 1, humanhuman

Predictions only

Length 355 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1P49238 FOXO1B-201ENST00000504678 1527 ntBASIC14.05□□□□□ -0.16
CX3CR1P49238 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 PBX1-215ENST00000559240 2866 ntTSL 5 BASIC14.05□□□□□ -0.16
CX3CR1P49238 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 CAMK2B-208ENST00000395747 1557 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 FAM45BP-202ENST00000592932 1624 ntBASIC14.05□□□□□ -0.16
CX3CR1P49238 PLAGL1-206ENST00000416623 3237 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 FUT8-213ENST00000557164 2269 ntTSL 2 BASIC14.05□□□□□ -0.16
CX3CR1P49238 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 NKG7-201ENST00000221978 843 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 ITGA9-AS1-201ENST00000366441 895 ntTSL 3 BASIC14.05□□□□□ -0.16
CX3CR1P49238 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 CBR1-202ENST00000399191 838 ntTSL 3 BASIC14.05□□□□□ -0.16
CX3CR1P49238 PP14571-201ENST00000404327 934 ntTSL 2 BASIC14.05□□□□□ -0.16
CX3CR1P49238 PIK3CD-AS2-201ENST00000415330 939 ntTSL 5 BASIC14.05□□□□□ -0.16
CX3CR1P49238 SPDYE11-202ENST00000450699 704 ntBASIC14.05□□□□□ -0.16
CX3CR1P49238 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC14.05□□□□□ -0.16
CX3CR1P49238 NTMT1-205ENST00000459968 1123 ntTSL 2 BASIC14.05□□□□□ -0.16
CX3CR1P49238 MDH2-205ENST00000461263 648 ntTSL 2 BASIC14.05□□□□□ -0.16
CX3CR1P49238 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC14.05□□□□□ -0.16
CX3CR1P49238 NMU-202ENST00000505262 693 ntTSL 3 BASIC14.05□□□□□ -0.16
CX3CR1P49238 RNA5SP410-201ENST00000516285 106 ntBASIC14.05□□□□□ -0.16
CX3CR1P49238 SPDYE9P-201ENST00000570642 692 ntBASIC14.05□□□□□ -0.16
CX3CR1P49238 PAM16-215ENST00000577031 548 ntTSL 4 BASIC14.05□□□□□ -0.16
CX3CR1P49238 AC061975.2-201ENST00000581722 295 ntBASIC14.05□□□□□ -0.16
CX3CR1P49238 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.05□□□□□ -0.16
CX3CR1P49238 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC14.05□□□□□ -0.16
CX3CR1P49238 AC024592.3-202ENST00000586349 506 ntTSL 2 BASIC14.05□□□□□ -0.16
CX3CR1P49238 C19orf70-206ENST00000590389 769 ntTSL 3 BASIC14.05□□□□□ -0.16
CX3CR1P49238 NKG7-205ENST00000600427 520 ntTSL 3 BASIC14.05□□□□□ -0.16
CX3CR1P49238 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 SPDYE10P-202ENST00000612005 668 ntBASIC14.05□□□□□ -0.16
CX3CR1P49238 SPDYE8P-202ENST00000612377 668 ntBASIC14.05□□□□□ -0.16
CX3CR1P49238 KCTD15-201ENST00000284006 4918 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC14.05□□□□□ -0.16
CX3CR1P49238 NFE2L2-201ENST00000397062 2853 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 PNRC1-202ENST00000354922 1345 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC14.05□□□□□ -0.16
CX3CR1P49238 YY1AP1-210ENST00000368339 3073 ntAPPRIS ALT2 TSL 2 BASIC14.05□□□□□ -0.16
CX3CR1P49238 AC087289.2-201ENST00000587267 1419 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 ZNF451-201ENST00000357489 4998 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.05□□□□□ -0.16
CX3CR1P49238 GRK5-202ENST00000392870 2654 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC14.05□□□□□ -0.16
CX3CR1P49238 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC14.05□□□□□ -0.16
CX3CR1P49238 ALDH1A2-201ENST00000249750 4098 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC14.05□□□□□ -0.16
CX3CR1P49238 CCP110-201ENST00000381396 5446 ntAPPRIS ALT1 TSL 1 (best) BASIC14.05□□□□□ -0.16
CX3CR1P49238 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.04□□□□□ -0.16
CX3CR1P49238 SUCO-204ENST00000608151 5790 ntTSL 5 BASIC14.04□□□□□ -0.16
CX3CR1P49238 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 SQSTM1-213ENST00000510187 1714 ntTSL 5 BASIC14.04□□□□□ -0.16
CX3CR1P49238 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC14.04□□□□□ -0.16
CX3CR1P49238 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CX3CR1P49238 ACBD5-202ENST00000375897 4173 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
CX3CR1P49238 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 CACFD1-207ENST00000542192 2754 ntTSL 2 BASIC14.04□□□□□ -0.16
CX3CR1P49238 C6orf223-201ENST00000336600 3581 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 TMED5-202ENST00000370282 6104 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 NTRK2-201ENST00000277120 8633 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC14.04□□□□□ -0.16
CX3CR1P49238 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 BAX-203ENST00000354470 433 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 YBX2P1-201ENST00000394192 760 ntBASIC14.04□□□□□ -0.16
CX3CR1P49238 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC14.04□□□□□ -0.16
CX3CR1P49238 TTC28-AS1-213ENST00000434221 972 ntTSL 3 BASIC14.04□□□□□ -0.16
CX3CR1P49238 SNHG6-201ENST00000520348 648 ntTSL 2 BASIC14.04□□□□□ -0.16
CX3CR1P49238 KRT18P58-201ENST00000527480 1120 ntBASIC14.04□□□□□ -0.16
CX3CR1P49238 EHF-205ENST00000527935 557 ntTSL 2 BASIC14.04□□□□□ -0.16
CX3CR1P49238 AC243562.2-201ENST00000561247 970 ntBASIC14.04□□□□□ -0.16
CX3CR1P49238 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC14.04□□□□□ -0.16
CX3CR1P49238 LINC02228-204ENST00000642115 2962 ntBASIC14.04□□□□□ -0.16
CX3CR1P49238 SEC63-201ENST00000369002 6411 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 DNAJC2-203ENST00000379263 2167 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
CX3CR1P49238 WDR74-206ENST00000529106 1366 ntAPPRIS P1 TSL 2 BASIC14.04□□□□□ -0.16
CX3CR1P49238 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC14.04□□□□□ -0.16
CX3CR1P49238 OGFOD2-224ENST00000545612 1465 ntTSL 2 BASIC14.04□□□□□ -0.16
CX3CR1P49238 TRPV4-204ENST00000536838 2514 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.04□□□□□ -0.16
CX3CR1P49238 NID2-208ENST00000617139 3827 ntTSL 5 BASIC14.04□□□□□ -0.16
CX3CR1P49238 CICP13-201ENST00000422015 2789 ntBASIC14.04□□□□□ -0.16
CX3CR1P49238 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC14.04□□□□□ -0.16
CX3CR1P49238 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC14.04□□□□□ -0.16
CX3CR1P49238 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC14.04□□□□□ -0.16
CX3CR1P49238 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 NR3C1-203ENST00000394464 6795 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
CX3CR1P49238 RFX1-201ENST00000254325 4332 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
Retrieved 100 of 98,524 protein–RNA pairs in 43.7 ms