Protein–RNA interactions for Protein: P43681

CHRNA4, Neuronal acetylcholine receptor subunit alpha-4, humanhuman

Predictions only

Length 627 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHRNA4P43681 TUBB3P1-201ENST00000405796 1332 ntBASIC16.06■□□□□ 0.16
CHRNA4P43681 PRRG3-205ENST00000538575 1303 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CHRNA4P43681 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 GPR162-202ENST00000382315 1150 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 SPDYE17-201ENST00000412399 783 ntBASIC16.06■□□□□ 0.16
CHRNA4P43681 AL080243.2-201ENST00000418783 582 ntBASIC16.06■□□□□ 0.16
CHRNA4P43681 DNAJB6-209ENST00000443280 1159 ntTSL 2 BASIC16.06■□□□□ 0.16
CHRNA4P43681 CNN2P2-201ENST00000443536 909 ntBASIC16.06■□□□□ 0.16
CHRNA4P43681 CNN2P3-201ENST00000450201 906 ntBASIC16.06■□□□□ 0.16
CHRNA4P43681 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC16.06■□□□□ 0.16
CHRNA4P43681 AC091053.1-201ENST00000529883 744 ntTSL 3 BASIC16.06■□□□□ 0.16
CHRNA4P43681 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 RPL28-205ENST00000558131 444 ntTSL 5 BASIC16.06■□□□□ 0.16
CHRNA4P43681 UBE2Q2L-201ENST00000558195 498 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
CHRNA4P43681 AC025678.2-201ENST00000562061 970 ntBASIC16.06■□□□□ 0.16
CHRNA4P43681 COMMD4-207ENST00000562789 746 ntTSL 2 BASIC16.06■□□□□ 0.16
CHRNA4P43681 AL589739.1-201ENST00000607720 493 ntBASIC16.06■□□□□ 0.16
CHRNA4P43681 SPDYE12P-201ENST00000618416 771 ntBASIC16.06■□□□□ 0.16
CHRNA4P43681 AL136317.3-201ENST00000618497 906 ntBASIC16.06■□□□□ 0.16
CHRNA4P43681 FER1L4-210ENST00000615531 5998 ntBASIC16.06■□□□□ 0.16
CHRNA4P43681 KMT5A-202ENST00000402868 3140 ntAPPRIS P2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 GATA3-201ENST00000346208 2654 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC16.06■□□□□ 0.16
CHRNA4P43681 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC16.06■□□□□ 0.16
CHRNA4P43681 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC16.06■□□□□ 0.16
CHRNA4P43681 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 UNC5C-203ENST00000506749 2220 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
CHRNA4P43681 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.05■□□□□ 0.16
CHRNA4P43681 OSGIN2-202ENST00000451899 4266 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 SNAP47-AS1-201ENST00000413347 1708 ntTSL 2 BASIC16.05■□□□□ 0.16
CHRNA4P43681 AC092384.3-202ENST00000564646 2873 ntBASIC16.05■□□□□ 0.16
CHRNA4P43681 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
CHRNA4P43681 STAT3-201ENST00000264657 5047 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 IDH3G-203ENST00000370093 1662 ntTSL 2 BASIC16.05■□□□□ 0.16
CHRNA4P43681 PDE4C-202ENST00000355502 5979 ntAPPRIS P3 TSL 2 BASIC16.05■□□□□ 0.16
CHRNA4P43681 GNAL-202ENST00000334049 6535 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
CHRNA4P43681 PDK2-201ENST00000007708 2384 ntTSL 2 BASIC16.05■□□□□ 0.16
CHRNA4P43681 AC136621.1-201ENST00000624017 2304 ntBASIC16.05■□□□□ 0.16
CHRNA4P43681 LDOC1-201ENST00000370526 1381 ntAPPRIS P1 BASIC16.05■□□□□ 0.16
CHRNA4P43681 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 ZDHHC19-201ENST00000296326 1306 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
CHRNA4P43681 LCK-206ENST00000373564 2137 ntTSL 5 BASIC16.05■□□□□ 0.16
CHRNA4P43681 WRB-204ENST00000398753 699 ntTSL 3 BASIC16.05■□□□□ 0.16
CHRNA4P43681 RPL37AP1-201ENST00000412502 279 ntBASIC16.05■□□□□ 0.16
CHRNA4P43681 NME4-207ENST00000450036 985 ntTSL 3 BASIC16.05■□□□□ 0.16
CHRNA4P43681 AC125807.1-201ENST00000483097 614 ntBASIC16.05■□□□□ 0.16
CHRNA4P43681 FXR1-221ENST00000491674 365 ntTSL 2 BASIC16.05■□□□□ 0.16
CHRNA4P43681 C3orf67-212ENST00000491845 832 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 ZNF606-202ENST00000546715 636 ntTSL 4 BASIC16.05■□□□□ 0.16
CHRNA4P43681 LSM12-202ENST00000585388 942 ntTSL 3 BASIC16.05■□□□□ 0.16
CHRNA4P43681 AC097359.3-201ENST00000603982 1210 ntBASIC16.05■□□□□ 0.16
CHRNA4P43681 COQ4-205ENST00000609948 956 ntTSL 2 BASIC16.05■□□□□ 0.16
CHRNA4P43681 AC244153.1-202ENST00000617855 482 ntTSL 3 BASIC16.05■□□□□ 0.16
CHRNA4P43681 AC079416.2-201ENST00000625035 1193 ntBASIC16.05■□□□□ 0.16
CHRNA4P43681 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC16.05■□□□□ 0.16
CHRNA4P43681 TNFRSF14-AS1-202ENST00000432521 3608 ntTSL 2 BASIC16.05■□□□□ 0.16
CHRNA4P43681 TMUB2-209ENST00000587989 1969 ntAPPRIS ALT1 TSL 3 BASIC16.05■□□□□ 0.16
CHRNA4P43681 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 DNAAF5-201ENST00000297440 3410 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 HMGA1-204ENST00000401473 1887 ntAPPRIS ALT1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 FBN1-205ENST00000560355 4109 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 APBA2-205ENST00000558330 3349 ntTSL 2 BASIC16.05■□□□□ 0.16
CHRNA4P43681 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 SIGLEC7-202ENST00000317643 1754 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 C9orf78-201ENST00000372447 1795 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 RABL2B-204ENST00000395593 2341 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 FES-204ENST00000414248 2327 ntTSL 2 BASIC16.05■□□□□ 0.16
CHRNA4P43681 B3GLCT-201ENST00000343307 4254 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 YY1AP1-211ENST00000368340 2927 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 VAV2-201ENST00000371850 4837 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
CHRNA4P43681 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA4P43681 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA4P43681 VPS26A-201ENST00000263559 2697 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA4P43681 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA4P43681 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC16.04■□□□□ 0.16
CHRNA4P43681 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA4P43681 KRT8P12-202ENST00000472924 1397 ntBASIC16.04■□□□□ 0.16
CHRNA4P43681 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA4P43681 NRSN2-210ENST00000621012 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA4P43681 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA4P43681 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA4P43681 ATP6V1B2-201ENST00000276390 2875 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA4P43681 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.04■□□□□ 0.16
CHRNA4P43681 RGP1-201ENST00000378078 7018 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA4P43681 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA4P43681 MRPL13-201ENST00000306185 1086 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA4P43681 LINC00313-201ENST00000332440 579 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA4P43681 SNHG11-201ENST00000359074 1031 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
CHRNA4P43681 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC16.04■□□□□ 0.16
CHRNA4P43681 AC026202.2-201ENST00000439325 672 ntTSL 2 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 63.1 ms