Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 C16orf89-203ENST00000474471 1829 ntAPPRIS ALT2 TSL 5 BASIC26.03■■□□□ 1.76
CUX1P39880 AC124067.4-201ENST00000519691 2379 ntBASIC26.03■■□□□ 1.76
CUX1P39880 ACYP2-203ENST00000406041 1913 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CUX1P39880 PKN3-201ENST00000291906 3375 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CUX1P39880 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CUX1P39880 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC26.03■■□□□ 1.76
CUX1P39880 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CUX1P39880 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC26.03■■□□□ 1.76
CUX1P39880 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CUX1P39880 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CUX1P39880 COL9A1-201ENST00000320755 3059 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CUX1P39880 C6orf47-202ENST00000375911 2475 ntAPPRIS P1 BASIC26.03■■□□□ 1.76
CUX1P39880 NREP-204ENST00000419114 704 ntAPPRIS P1 TSL 2 BASIC26.03■■□□□ 1.76
CUX1P39880 AC016825.1-201ENST00000433600 778 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CUX1P39880 LINC01006-204ENST00000435354 545 ntTSL 2 BASIC26.03■■□□□ 1.76
CUX1P39880 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC26.03■■□□□ 1.76
CUX1P39880 AC067930.5-201ENST00000531730 1173 ntTSL 2 BASIC26.03■■□□□ 1.76
CUX1P39880 TPO-215ENST00000539820 1157 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CUX1P39880 SDR39U1-212ENST00000555365 976 ntTSL 3 BASIC26.03■■□□□ 1.76
CUX1P39880 AC009088.2-201ENST00000564743 463 ntTSL 5 BASIC26.03■■□□□ 1.76
CUX1P39880 U62317.3-201ENST00000608319 855 ntBASIC26.03■■□□□ 1.76
CUX1P39880 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC26.03■■□□□ 1.76
CUX1P39880 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CUX1P39880 CCDC43-202ENST00000457422 2058 ntTSL 1 (best) BASIC26.03■■□□□ 1.76
CUX1P39880 DFNA5-207ENST00000419307 2265 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CUX1P39880 SPATC1L-201ENST00000291672 2303 ntAPPRIS P1 TSL 2 BASIC26.02■■□□□ 1.76
CUX1P39880 TRPC6-202ENST00000348423 2448 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CUX1P39880 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC26.02■■□□□ 1.76
CUX1P39880 MB21D2-201ENST00000392452 3368 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CUX1P39880 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CUX1P39880 SPAG11A-203ENST00000351436 534 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CUX1P39880 SPAG11B-204ENST00000361111 534 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CUX1P39880 DUSP13-202ENST00000372700 781 ntTSL 3 BASIC26.02■■□□□ 1.76
CUX1P39880 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC26.02■■□□□ 1.76
CUX1P39880 RPL35A-205ENST00000448864 549 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CUX1P39880 AC093879.1-201ENST00000508959 1176 ntTSL 2 BASIC26.02■■□□□ 1.76
CUX1P39880 AC013355.1-201ENST00000562625 723 ntBASIC26.02■■□□□ 1.76
CUX1P39880 NAT9-222ENST00000583476 583 ntTSL 3 BASIC26.02■■□□□ 1.76
CUX1P39880 ZCCHC17-207ENST00000616859 1458 ntTSL 4 BASIC26.02■■□□□ 1.76
CUX1P39880 ZCCHC17-208ENST00000618216 1489 ntTSL 3 BASIC26.02■■□□□ 1.76
CUX1P39880 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC26.02■■□□□ 1.76
CUX1P39880 ZNF750-202ENST00000572562 1513 ntTSL 2 BASIC26.02■■□□□ 1.76
CUX1P39880 LRRC59-203ENST00000576448 1531 ntBASIC26.02■■□□□ 1.76
CUX1P39880 HCRTR1-202ENST00000373706 1642 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CUX1P39880 ETV4-211ENST00000591713 1727 ntAPPRIS P1 TSL 1 (best) BASIC26.02■■□□□ 1.76
CUX1P39880 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC26.02■■□□□ 1.76
CUX1P39880 CHRNB1-201ENST00000306071 2557 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CUX1P39880 PARD3-205ENST00000374773 3420 ntTSL 5 BASIC26.01■■□□□ 1.75
CUX1P39880 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CUX1P39880 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC26.01■■□□□ 1.75
CUX1P39880 MAGEA4-205ENST00000393920 1721 ntAPPRIS P1 TSL 2 BASIC26.01■■□□□ 1.75
CUX1P39880 VCPKMT-201ENST00000395859 795 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CUX1P39880 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC26.01■■□□□ 1.75
CUX1P39880 AC060234.1-201ENST00000422966 474 ntTSL 3 BASIC26.01■■□□□ 1.75
CUX1P39880 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC26.01■■□□□ 1.75
CUX1P39880 AC069224.1-201ENST00000566372 1715 ntBASIC26.01■■□□□ 1.75
CUX1P39880 AC007787.1-201ENST00000588095 1583 ntBASIC26.01■■□□□ 1.75
CUX1P39880 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CUX1P39880 MTHFR-217ENST00000641820 1569 ntBASIC26.01■■□□□ 1.75
CUX1P39880 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CUX1P39880 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC26.01■■□□□ 1.75
CUX1P39880 PAK4-203ENST00000360442 2855 ntAPPRIS P1 TSL 5 BASIC26.01■■□□□ 1.75
CUX1P39880 AC022211.2-201ENST00000585075 2527 ntBASIC26.01■■□□□ 1.75
CUX1P39880 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CUX1P39880 FGF1-201ENST00000337706 1469 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
CUX1P39880 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC26■■□□□ 1.75
CUX1P39880 METTL6-201ENST00000383789 1413 ntTSL 2 BASIC26■■□□□ 1.75
CUX1P39880 BORCS5-201ENST00000298571 549 ntTSL 1 (best) BASIC26■■□□□ 1.75
CUX1P39880 COL5A1-AS1-201ENST00000371813 336 ntTSL 2 BASIC26■■□□□ 1.75
CUX1P39880 FBXO44-203ENST00000376760 822 ntTSL 2 BASIC26■■□□□ 1.75
CUX1P39880 HLA-DQB2-229ENST00000411527 1059 ntBASIC26■■□□□ 1.75
CUX1P39880 AC007274.2-201ENST00000421675 662 ntBASIC26■■□□□ 1.75
CUX1P39880 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC26■■□□□ 1.75
CUX1P39880 MPRIPP1-201ENST00000452433 1089 ntBASIC26■■□□□ 1.75
CUX1P39880 C1QTNF1-AS1-202ENST00000581579 865 ntTSL 1 (best) BASIC26■■□□□ 1.75
CUX1P39880 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC26■■□□□ 1.75
CUX1P39880 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC26■■□□□ 1.75
CUX1P39880 FAM156B-207ENST00000616419 2032 ntAPPRIS P2 TSL 2 BASIC26■■□□□ 1.75
CUX1P39880 FAM156A-212ENST00000617970 2032 ntAPPRIS P2 TSL 2 BASIC26■■□□□ 1.75
CUX1P39880 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CUX1P39880 OAZ2-207ENST00000560258 1744 ntTSL 5 BASIC26■■□□□ 1.75
CUX1P39880 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC26■■□□□ 1.75
CUX1P39880 FGFR1OP-201ENST00000349556 1484 ntAPPRIS ALT2 TSL 1 (best) BASIC26■■□□□ 1.75
CUX1P39880 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC26■■□□□ 1.75
CUX1P39880 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC26■■□□□ 1.75
CUX1P39880 AC092978.1-201ENST00000474979 1309 ntTSL 5 BASIC25.99■■□□□ 1.75
CUX1P39880 AC092978.1-202ENST00000637590 1327 ntBASIC25.99■■□□□ 1.75
CUX1P39880 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CUX1P39880 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CUX1P39880 TSPO-203ENST00000396265 1075 ntAPPRIS P1 TSL 5 BASIC25.99■■□□□ 1.75
CUX1P39880 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CUX1P39880 AC009403.1-204ENST00000469539 597 ntTSL 2 BASIC25.99■■□□□ 1.75
CUX1P39880 ATP6V1G2-210ENST00000483251 662 ntTSL 3 BASIC25.99■■□□□ 1.75
CUX1P39880 AC100850.1-201ENST00000506768 649 ntBASIC25.99■■□□□ 1.75
CUX1P39880 AC005920.3-202ENST00000512717 789 ntTSL 3 BASIC25.99■■□□□ 1.75
CUX1P39880 ZNF385A-213ENST00000551771 1111 ntTSL 1 (best) BASIC25.99■■□□□ 1.75
CUX1P39880 LINC01229-204ENST00000568751 720 ntTSL 3 BASIC25.99■■□□□ 1.75
CUX1P39880 MRPL34-203ENST00000595444 863 ntAPPRIS ALT2 TSL 3 BASIC25.99■■□□□ 1.75
CUX1P39880 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC25.99■■□□□ 1.75
CUX1P39880 NUDT19-201ENST00000397061 2967 ntAPPRIS P1 TSL 2 BASIC25.99■■□□□ 1.75
Retrieved 100 of 98,524 protein–RNA pairs in 39.2 ms