Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 STK40-204ENST00000373132 3621 ntAPPRIS P3 TSL 1 (best) BASIC15.28■□□□□ 0.04
MSX2P35548 SLC52A3-202ENST00000381944 3060 ntTSL 2 BASIC15.28■□□□□ 0.04
MSX2P35548 DMTN-205ENST00000432128 2508 ntTSL 5 BASIC15.27■□□□□ 0.04
MSX2P35548 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MSX2P35548 FGD5P1-202ENST00000614866 2498 ntBASIC15.27■□□□□ 0.04
MSX2P35548 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC15.27■□□□□ 0.04
MSX2P35548 KLC4-204ENST00000453940 1945 ntTSL 2 BASIC15.27■□□□□ 0.04
MSX2P35548 SLC26A11-201ENST00000361193 2885 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MSX2P35548 IRF3-202ENST00000377135 1442 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MSX2P35548 RASAL2-AS1-202ENST00000421505 2329 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MSX2P35548 IER3-202ENST00000376377 1350 ntBASIC15.27■□□□□ 0.04
MSX2P35548 JAKMIP1-205ENST00000410077 1835 ntTSL 2 BASIC15.27■□□□□ 0.04
MSX2P35548 FRMD5-201ENST00000402883 4091 ntTSL 5 BASIC15.27■□□□□ 0.04
MSX2P35548 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.04
MSX2P35548 AC015656.1-201ENST00000624209 3578 ntBASIC15.27■□□□□ 0.04
MSX2P35548 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MSX2P35548 FMO5-208ENST00000578284 1784 ntTSL 5 BASIC15.27■□□□□ 0.04
MSX2P35548 GSTM4-201ENST00000326729 1321 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MSX2P35548 TP53INP1-201ENST00000342697 5638 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MSX2P35548 IRF8-201ENST00000268638 3030 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MSX2P35548 ADSL-220ENST00000636714 1734 ntAPPRIS ALT1 TSL 5 BASIC15.27■□□□□ 0.04
MSX2P35548 SLX1A-201ENST00000251303 1091 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
MSX2P35548 SLX1B-201ENST00000330181 1165 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.04
MSX2P35548 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC15.27■□□□□ 0.04
MSX2P35548 EMD-201ENST00000369835 966 ntTSL 3 BASIC15.27■□□□□ 0.04
MSX2P35548 BEX3-204ENST00000372645 913 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
MSX2P35548 SLC2A1-204ENST00000460369 541 ntTSL 2 BASIC15.27■□□□□ 0.04
MSX2P35548 MSRA-206ENST00000521209 814 ntTSL 3 BASIC15.27■□□□□ 0.04
MSX2P35548 TRPC2-202ENST00000526541 1189 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
MSX2P35548 SRSF1-209ENST00000585096 568 ntTSL 4 BASIC15.27■□□□□ 0.04
MSX2P35548 AC073082.1-201ENST00000602369 2103 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
MSX2P35548 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC15.27■□□□□ 0.04
MSX2P35548 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
MSX2P35548 NCKIPSD-204ENST00000416649 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
MSX2P35548 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15.27■□□□□ 0.03
MSX2P35548 DAGLA-201ENST00000257215 5757 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
MSX2P35548 PSD4-201ENST00000245796 5188 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
MSX2P35548 AGAP4-208ENST00000618171 2387 ntTSL 5 BASIC15.27■□□□□ 0.03
MSX2P35548 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.27■□□□□ 0.03
MSX2P35548 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC15.27■□□□□ 0.03
MSX2P35548 ST20-AS1-201ENST00000560255 4223 ntBASIC15.27■□□□□ 0.03
MSX2P35548 FKBP5-203ENST00000539068 3827 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
MSX2P35548 ASIC4-201ENST00000347842 2684 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
MSX2P35548 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.03
MSX2P35548 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.27■□□□□ 0.03
MSX2P35548 TGOLN2-205ENST00000409232 2235 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
MSX2P35548 SLC26A1-201ENST00000361661 3660 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
MSX2P35548 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.27■□□□□ 0.03
MSX2P35548 ST3GAL3-209ENST00000361400 2195 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 SYAP1-201ENST00000380155 6129 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 ATP6V1E1-201ENST00000253413 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 CFAP43-203ENST00000369719 1434 ntTSL 2 BASIC15.26■□□□□ 0.03
MSX2P35548 GPD2-208ENST00000438166 2457 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 UNC5A-201ENST00000329542 3812 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 RCSD1-202ENST00000367854 3135 ntAPPRIS P3 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 GPR17-201ENST00000272644 2062 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 BRSK2-204ENST00000526678 2091 ntAPPRIS ALT2 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.26■□□□□ 0.03
MSX2P35548 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC15.26■□□□□ 0.03
MSX2P35548 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC15.26■□□□□ 0.03
MSX2P35548 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC15.26■□□□□ 0.03
MSX2P35548 KIF25-201ENST00000351261 1326 ntTSL 5 BASIC15.26■□□□□ 0.03
MSX2P35548 MSI1-201ENST00000257552 2975 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 CUEDC1-206ENST00000577830 3621 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 ILF3-AS1-201ENST00000591501 1983 ntBASIC15.26■□□□□ 0.03
MSX2P35548 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 STIP1-207ENST00000538945 1900 ntTSL 2 BASIC15.26■□□□□ 0.03
MSX2P35548 LENG8-208ENST00000610347 5789 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
MSX2P35548 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 BOLA2B-201ENST00000305321 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 BOLA2-201ENST00000330978 1012 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 ID2-202ENST00000331129 623 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 FIBP-202ENST00000357519 1248 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 TIMM17B-202ENST00000396779 1099 ntTSL 5 BASIC15.26■□□□□ 0.03
MSX2P35548 RBM17P3-201ENST00000417687 1192 ntBASIC15.26■□□□□ 0.03
MSX2P35548 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC15.26■□□□□ 0.03
MSX2P35548 DUSP5P1-201ENST00000441325 1139 ntBASIC15.26■□□□□ 0.03
MSX2P35548 RNASET2-206ENST00000476238 887 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
MSX2P35548 RPS15P9-201ENST00000494093 319 ntBASIC15.26■□□□□ 0.03
MSX2P35548 LMX1B-203ENST00000526117 1195 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 BATF2-204ENST00000527716 1230 ntTSL 2 BASIC15.26■□□□□ 0.03
MSX2P35548 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.26■□□□□ 0.03
MSX2P35548 SELENOH-204ENST00000534355 818 ntAPPRIS P2 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 STXBP6-201ENST00000323944 4132 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 SLC26A11-203ENST00000546047 2807 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 DNAJC14-203ENST00000357606 3416 ntAPPRIS P1 TSL 5 BASIC15.26■□□□□ 0.03
MSX2P35548 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 CASP2-207ENST00000619992 4006 ntTSL 1 (best) BASIC15.26■□□□□ 0.03
MSX2P35548 CEP78-203ENST00000376598 2404 ntAPPRIS ALT2 TSL 5 BASIC15.26■□□□□ 0.03
MSX2P35548 PRDM4-201ENST00000228437 4210 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
MSX2P35548 AGTPBP1-208ENST00000628899 4222 ntTSL 2 BASIC15.26■□□□□ 0.03
MSX2P35548 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC15.26■□□□□ 0.03
MSX2P35548 VIPR2-202ENST00000377633 1491 ntTSL 2 BASIC15.26■□□□□ 0.03
MSX2P35548 ANKHD1-202ENST00000297183 7606 ntTSL 5 BASIC15.26■□□□□ 0.03
MSX2P35548 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.26■□□□□ 0.03
MSX2P35548 HOXB4-201ENST00000332503 3757 ntAPPRIS P1 TSL 1 (best) BASIC15.26■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 66.5 ms