Protein–RNA interactions for Protein: P29074

PTPN4, Tyrosine-protein phosphatase non-receptor type 4, humanhuman

Predictions only

Length 926 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4P29074 LINC01101-201ENST00000622953 1884 ntBASIC16.07■□□□□ 0.16
PTPN4P29074 REEP2-211ENST00000613650 1944 ntTSL 5 BASIC16.07■□□□□ 0.16
PTPN4P29074 MAX-204ENST00000358402 1973 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN4P29074 TNFSF13-202ENST00000349228 2036 ntTSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN4P29074 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN4P29074 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN4P29074 MIER1-208ENST00000401041 2552 ntTSL 2 BASIC16.07■□□□□ 0.16
PTPN4P29074 EXOC6B-209ENST00000634650 2583 ntTSL 5 BASIC16.07■□□□□ 0.16
PTPN4P29074 GRSF1-208ENST00000545193 2682 ntTSL 2 BASIC16.07■□□□□ 0.16
PTPN4P29074 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN4P29074 BICDL1-201ENST00000397558 3055 ntAPPRIS P1 TSL 5 BASIC16.07■□□□□ 0.16
PTPN4P29074 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC16.07■□□□□ 0.16
PTPN4P29074 PPM1B-204ENST00000378551 3877 ntAPPRIS ALT1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN4P29074 IPO8-201ENST00000256079 5325 ntAPPRIS P1 TSL 1 (best) BASIC16.07■□□□□ 0.16
PTPN4P29074 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC16.06■□□□□ 0.16
PTPN4P29074 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 ARHGEF16-203ENST00000378378 3061 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PTPN4P29074 RCSD1-206ENST00000537350 3044 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN4P29074 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC16.06■□□□□ 0.16
PTPN4P29074 MECR-202ENST00000373791 2416 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN4P29074 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC16.06■□□□□ 0.16
PTPN4P29074 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 ZNF568-203ENST00000427117 1827 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 HNRNPRP1-201ENST00000453465 1695 ntBASIC16.06■□□□□ 0.16
PTPN4P29074 LYPD5-203ENST00000594013 1519 ntAPPRIS P3 TSL 2 BASIC16.06■□□□□ 0.16
PTPN4P29074 KLK3-201ENST00000326003 1463 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 N4BP1-201ENST00000262384 7106 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 MBL1P-201ENST00000480805 1424 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 AC105339.1-201ENST00000440089 1362 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 ABHD11-203ENST00000395147 812 ntTSL 3 BASIC16.06■□□□□ 0.16
PTPN4P29074 IRF3-204ENST00000442265 315 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 TMEM205-202ENST00000447337 916 ntAPPRIS P1 TSL 2 BASIC16.06■□□□□ 0.16
PTPN4P29074 SLC25A6P2-201ENST00000497974 877 ntBASIC16.06■□□□□ 0.16
PTPN4P29074 NMU-203ENST00000507338 658 ntTSL 3 BASIC16.06■□□□□ 0.16
PTPN4P29074 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN4P29074 AC112191.1-201ENST00000523689 701 ntBASIC16.06■□□□□ 0.16
PTPN4P29074 CYB561D1-209ENST00000533024 913 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN4P29074 PXN-AS1-201ENST00000535200 1170 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN4P29074 UBE3D-208ENST00000626828 114 ntTSL 5 BASIC16.06■□□□□ 0.16
PTPN4P29074 AL513210.1-201ENST00000629608 234 ntBASIC16.06■□□□□ 0.16
PTPN4P29074 PSMG3-AS1-201ENST00000437621 5701 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 GRID2IP-202ENST00000452113 3428 ntTSL 5 BASIC16.06■□□□□ 0.16
PTPN4P29074 ADAM22-204ENST00000398204 9334 ntAPPRIS ALT2 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 TACR3-201ENST00000304883 5190 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 ARL5B-201ENST00000377275 7196 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 GPER1-201ENST00000297469 2778 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 NDOR1-202ENST00000371521 2497 ntTSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC16.06■□□□□ 0.16
PTPN4P29074 TEX19-201ENST00000333437 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC16.06■□□□□ 0.16
PTPN4P29074 NEFL-203ENST00000619417 1879 ntTSL 5 BASIC16.05■□□□□ 0.16
PTPN4P29074 MAGEA2-201ENST00000595583 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 VWA7-201ENST00000375688 2881 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
PTPN4P29074 LINC01144-201ENST00000626198 1710 ntBASIC16.05■□□□□ 0.16
PTPN4P29074 AC092919.2-201ENST00000623631 1645 ntBASIC16.05■□□□□ 0.16
PTPN4P29074 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC16.05■□□□□ 0.16
PTPN4P29074 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 PDXP-202ENST00000403251 1571 ntTSL 2 BASIC16.05■□□□□ 0.16
PTPN4P29074 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 BRCC3-201ENST00000330045 2496 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 CACNA1G-201ENST00000352832 7848 ntAPPRIS ALT2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 TNFRSF13B-201ENST00000261652 1357 ntAPPRIS P2 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 UBR5-207ENST00000520539 10297 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 SLC29A1-202ENST00000371713 2168 ntAPPRIS P1 TSL 5 BASIC16.05■□□□□ 0.16
PTPN4P29074 ETNK1-202ENST00000335148 1083 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 AL109613.1-202ENST00000427243 639 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 PARD6G-203ENST00000470488 596 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 SWI5-205ENST00000495313 466 ntAPPRIS ALT2 TSL 3 BASIC16.05■□□□□ 0.16
PTPN4P29074 COX14-202ENST00000548985 677 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PTPN4P29074 AC010615.2-202ENST00000597444 832 ntTSL 3 BASIC16.05■□□□□ 0.16
PTPN4P29074 EPHX2-209ENST00000521780 2038 ntTSL 2 BASIC16.05■□□□□ 0.16
PTPN4P29074 CICP4-201ENST00000447359 2812 ntBASIC16.05■□□□□ 0.16
PTPN4P29074 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC16.05■□□□□ 0.16
PTPN4P29074 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PTPN4P29074 CDH16-207ENST00000568632 2526 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 ARPP19-202ENST00000561650 3245 ntTSL 2 BASIC16.05■□□□□ 0.16
PTPN4P29074 NR4A2-203ENST00000409108 1735 ntTSL 5 BASIC16.05■□□□□ 0.16
PTPN4P29074 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.05■□□□□ 0.16
PTPN4P29074 POU5F1-204ENST00000471529 1723 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC16.05■□□□□ 0.16
PTPN4P29074 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 ATP5S-201ENST00000245448 1671 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 FAM53C-202ENST00000434981 1686 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 GOLGA5-201ENST00000163416 2969 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 KLF5-201ENST00000377687 3566 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 PRKCZ-202ENST00000400921 2294 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 ARIH2-205ENST00000449376 2278 ntAPPRIS P1 TSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 JPT1-209ENST00000482348 1614 ntTSL 1 (best) BASIC16.05■□□□□ 0.16
PTPN4P29074 NFIC-210ENST00000590282 1558 ntTSL 2 BASIC16.04■□□□□ 0.16
PTPN4P29074 MAP3K10-201ENST00000253055 3436 ntAPPRIS P1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 DIAPH2-204ENST00000373054 3376 ntAPPRIS ALT2 TSL 5 BASIC16.04■□□□□ 0.16
PTPN4P29074 ESR2-201ENST00000267525 1518 ntTSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 MEAF6-201ENST00000296214 1525 ntAPPRIS ALT1 TSL 1 (best) BASIC16.04■□□□□ 0.16
PTPN4P29074 LINC02212-201ENST00000515243 2130 ntTSL 2 BASIC16.04■□□□□ 0.16
Retrieved 100 of 98,524 protein–RNA pairs in 72.4 ms