Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 TCEAL4-208ENST00000472484 1273 ntAPPRIS P3 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL9A1P20849 AC084048.1-201ENST00000505494 640 ntTSL 3 BASIC16.24■□□□□ 0.19
COL9A1P20849 AC009269.5-201ENST00000557800 755 ntTSL 3 BASIC16.24■□□□□ 0.19
COL9A1P20849 AIPL1-204ENST00000570466 1196 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL9A1P20849 LDLRAD4-208ENST00000586765 844 ntTSL 2 BASIC16.24■□□□□ 0.19
COL9A1P20849 C19orf25-205ENST00000588427 853 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL9A1P20849 WDR7-208ENST00000589935 544 ntTSL 4 BASIC16.24■□□□□ 0.19
COL9A1P20849 AC127024.7-201ENST00000625101 200 ntBASIC16.24■□□□□ 0.19
COL9A1P20849 ASIC3-203ENST00000357922 2232 ntTSL 1 (best) BASIC16.24■□□□□ 0.19
COL9A1P20849 P2RY6-202ENST00000393590 2398 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL9A1P20849 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC16.24■□□□□ 0.19
COL9A1P20849 AP005717.1-201ENST00000500705 1899 ntTSL 5 BASIC16.24■□□□□ 0.19
COL9A1P20849 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL9A1P20849 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC16.24■□□□□ 0.19
COL9A1P20849 FHL2-205ENST00000393353 1531 ntAPPRIS P1 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL9A1P20849 TRIM33-202ENST00000369543 3457 ntAPPRIS ALT2 TSL 1 (best) BASIC16.24■□□□□ 0.19
COL9A1P20849 NIPAL2-202ENST00000430223 4496 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC16.23■□□□□ 0.19
COL9A1P20849 WIF1-201ENST00000286574 2238 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 PEPD-202ENST00000397032 1754 ntTSL 2 BASIC16.23■□□□□ 0.19
COL9A1P20849 GLIPR2-205ENST00000619700 1645 ntTSL 3 BASIC16.23■□□□□ 0.19
COL9A1P20849 CYP2S1-201ENST00000310054 2782 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 DIABLO-204ENST00000413918 1859 ntTSL 2 BASIC16.23■□□□□ 0.19
COL9A1P20849 TMEM183A-201ENST00000367242 3019 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 TLE2-201ENST00000262953 2705 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 MIPEP-201ENST00000382172 2400 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC16.23■□□□□ 0.19
COL9A1P20849 SCRIB-201ENST00000320476 5143 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC16.23■□□□□ 0.19
COL9A1P20849 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 FAM177A1-202ENST00000382406 858 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC16.23■□□□□ 0.19
COL9A1P20849 LINC01237-201ENST00000415434 573 ntTSL 4 BASIC16.23■□□□□ 0.19
COL9A1P20849 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 MRPS25-203ENST00000444840 1281 ntTSL 2 BASIC16.23■□□□□ 0.19
COL9A1P20849 AC234782.1-201ENST00000451950 919 ntBASIC16.23■□□□□ 0.19
COL9A1P20849 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC16.23■□□□□ 0.19
COL9A1P20849 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC16.23■□□□□ 0.19
COL9A1P20849 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC16.23■□□□□ 0.19
COL9A1P20849 DIO3OS-203ENST00000554441 1068 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 METTL23-207ENST00000588783 1184 ntTSL 5 BASIC16.23■□□□□ 0.19
COL9A1P20849 SEPT9-233ENST00000590917 541 ntTSL 4 BASIC16.23■□□□□ 0.19
COL9A1P20849 UBL5-208ENST00000593087 320 ntTSL 3 BASIC16.23■□□□□ 0.19
COL9A1P20849 GMFG-209ENST00000600322 622 ntTSL 5 BASIC16.23■□□□□ 0.19
COL9A1P20849 ETV2-207ENST00000619399 994 ntTSL 5 BASIC16.23■□□□□ 0.19
COL9A1P20849 AC091544.8-201ENST00000619490 361 ntBASIC16.23■□□□□ 0.19
COL9A1P20849 AL031665.1-201ENST00000619766 572 ntTSL 4 BASIC16.23■□□□□ 0.19
COL9A1P20849 AC138466.4-201ENST00000623965 852 ntBASIC16.23■□□□□ 0.19
COL9A1P20849 WDR45-230ENST00000634559 1192 ntTSL 5 BASIC16.23■□□□□ 0.19
COL9A1P20849 CTSB-232ENST00000534510 1989 ntAPPRIS P1 TSL 5 BASIC16.23■□□□□ 0.19
COL9A1P20849 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC16.23■□□□□ 0.19
COL9A1P20849 PSEN2-211ENST00000626989 1972 ntTSL 5 BASIC16.23■□□□□ 0.19
COL9A1P20849 LTBP4-203ENST00000308370 4948 ntAPPRIS P4 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 KLK10-202ENST00000358789 1508 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 ACSM2A-213ENST00000575690 2322 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
COL9A1P20849 UBE2D2-202ENST00000398733 2702 ntAPPRIS P2 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 ZBTB46-203ENST00000395104 5198 ntAPPRIS P1 TSL 2 BASIC16.23■□□□□ 0.19
COL9A1P20849 PRR19-204ENST00000598490 1641 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 AC079922.2-201ENST00000457336 2022 ntTSL 2 BASIC16.23■□□□□ 0.19
COL9A1P20849 ENC1-201ENST00000302351 5520 ntAPPRIS P1 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 ZNF385A-203ENST00000394313 2430 ntTSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 TMC4-209ENST00000617472 2413 ntAPPRIS ALT2 TSL 1 (best) BASIC16.23■□□□□ 0.19
COL9A1P20849 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 SNX2-213ENST00000514949 2119 ntTSL 2 BASIC16.22■□□□□ 0.19
COL9A1P20849 ENKUR-202ENST00000376363 1318 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 ZSCAN30-212ENST00000639929 1305 ntTSL 5 BASIC16.22■□□□□ 0.19
COL9A1P20849 PTTG1IP-201ENST00000330938 2760 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 CD1E-213ENST00000444681 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 NPY4R-202ENST00000612632 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 NPY4R2-202ENST00000613306 1800 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 PKLR-201ENST00000342741 2083 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 NDUFS2-202ENST00000392179 2064 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 SLC25A2-201ENST00000239451 1417 ntAPPRIS P1 BASIC16.22■□□□□ 0.19
COL9A1P20849 ZDHHC8P1-204ENST00000433168 2309 ntTSL 2 BASIC16.22■□□□□ 0.19
COL9A1P20849 PHF23-202ENST00000454255 1662 ntTSL 2 BASIC16.22■□□□□ 0.19
COL9A1P20849 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC16.22■□□□□ 0.19
COL9A1P20849 RABL2A-203ENST00000393166 1052 ntAPPRIS P3 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 AL121901.1-201ENST00000419613 366 ntTSL 3 BASIC16.22■□□□□ 0.19
COL9A1P20849 POM121L10P-201ENST00000436994 1285 ntBASIC16.22■□□□□ 0.19
COL9A1P20849 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC16.22■□□□□ 0.19
COL9A1P20849 DNAJC27-AS1-207ENST00000451291 488 ntTSL 3 BASIC16.22■□□□□ 0.19
COL9A1P20849 AL138731.1-201ENST00000452624 739 ntTSL 3 BASIC16.22■□□□□ 0.19
COL9A1P20849 PRSS30P-202ENST00000475030 752 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC16.22■□□□□ 0.19
COL9A1P20849 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC16.22■□□□□ 0.19
COL9A1P20849 AP001029.1-201ENST00000589843 168 ntTSL 3 BASIC16.22■□□□□ 0.19
COL9A1P20849 AC093567.1-201ENST00000590649 877 ntTSL 3 BASIC16.22■□□□□ 0.19
COL9A1P20849 PAX3-207ENST00000409551 1782 ntAPPRIS ALT1 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 DNAJB8-AS1-201ENST00000471626 1798 ntTSL 2 BASIC16.22■□□□□ 0.19
COL9A1P20849 RGS7-203ENST00000366564 2295 ntAPPRIS ALT2 TSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 C1orf43-201ENST00000350592 1610 ntTSL 1 (best) BASIC16.22■□□□□ 0.19
COL9A1P20849 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC16.22■□□□□ 0.19
Retrieved 100 of 98,524 protein–RNA pairs in 46.5 ms