Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 VCX3B-202ENST00000381032 1171 ntAPPRIS P2 TSL 5 BASIC15.4■□□□□ 0.06
HOXC4P09017 IFI27L1-201ENST00000393115 674 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HOXC4P09017 AC079776.1-201ENST00000401540 1152 ntBASIC15.4■□□□□ 0.06
HOXC4P09017 MPV17-208ENST00000405076 603 ntTSL 5 BASIC15.4■□□□□ 0.06
HOXC4P09017 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC15.4■□□□□ 0.06
HOXC4P09017 KDM4A-AS1-204ENST00000439057 686 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HOXC4P09017 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC15.4■□□□□ 0.06
HOXC4P09017 CXorf40A-211ENST00000450602 1204 ntAPPRIS P3 TSL 3 BASIC15.4■□□□□ 0.06
HOXC4P09017 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.4■□□□□ 0.06
HOXC4P09017 ACRV1-202ENST00000527795 782 ntAPPRIS ALT2 TSL 2 BASIC15.4■□□□□ 0.06
HOXC4P09017 KRT17P8-201ENST00000540749 863 ntBASIC15.4■□□□□ 0.06
HOXC4P09017 NOP2-220ENST00000545915 630 ntTSL 2 BASIC15.4■□□□□ 0.06
HOXC4P09017 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
HOXC4P09017 PIGL-212ENST00000581006 554 ntTSL 4 BASIC15.4■□□□□ 0.06
HOXC4P09017 BTNL10-201ENST00000595971 695 ntBASIC15.4■□□□□ 0.06
HOXC4P09017 AC008735.3-201ENST00000596646 500 ntBASIC15.4■□□□□ 0.06
HOXC4P09017 AC011497.1-201ENST00000596781 561 ntTSL 4 BASIC15.4■□□□□ 0.06
HOXC4P09017 AL359881.2-201ENST00000602973 570 ntBASIC15.4■□□□□ 0.06
HOXC4P09017 AC015819.2-201ENST00000618730 555 ntTSL 3 BASIC15.4■□□□□ 0.06
HOXC4P09017 STKLD1-201ENST00000371957 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HOXC4P09017 SGO1-203ENST00000412997 2587 ntAPPRIS P4 TSL 1 (best) BASIC15.4■□□□□ 0.06
HOXC4P09017 SUFU-202ENST00000369902 5001 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HOXC4P09017 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC15.4■□□□□ 0.06
HOXC4P09017 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HOXC4P09017 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
HOXC4P09017 AC026412.1-202ENST00000512335 2231 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HOXC4P09017 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC15.4■□□□□ 0.06
HOXC4P09017 TK2-207ENST00000544898 3441 ntAPPRIS P3 TSL 1 (best) BASIC15.4■□□□□ 0.06
HOXC4P09017 REL-202ENST00000394479 2398 ntAPPRIS ALT2 TSL 1 (best) BASIC15.4■□□□□ 0.06
HOXC4P09017 PRMT2-202ENST00000334494 1334 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HOXC4P09017 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.4■□□□□ 0.06
HOXC4P09017 AGER-206ENST00000375070 1463 ntTSL 5 BASIC15.4■□□□□ 0.06
HOXC4P09017 APOBEC3A-202ENST00000402255 1478 ntAPPRIS P1 TSL 5 BASIC15.4■□□□□ 0.06
HOXC4P09017 AGER-208ENST00000438221 1493 ntTSL 1 (best) BASIC15.4■□□□□ 0.06
HOXC4P09017 AL513523.2-202ENST00000427283 2040 ntBASIC15.39■□□□□ 0.05
HOXC4P09017 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.39■□□□□ 0.05
HOXC4P09017 MAP3K20-203ENST00000409176 2572 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 CDH23-205ENST00000398809 4533 ntTSL 5 BASIC15.39■□□□□ 0.05
HOXC4P09017 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC15.39■□□□□ 0.05
HOXC4P09017 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 TLE3-212ENST00000558201 2766 ntTSL 5 BASIC15.39■□□□□ 0.05
HOXC4P09017 MAP3K6-202ENST00000374040 4309 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 COL27A1-201ENST00000356083 7790 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 SYDE2-202ENST00000341460 5512 ntAPPRIS P1 TSL 5 BASIC15.39■□□□□ 0.05
HOXC4P09017 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC15.39■□□□□ 0.05
HOXC4P09017 ACKR1-201ENST00000368121 1240 ntBASIC15.39■□□□□ 0.05
HOXC4P09017 PDGFB-202ENST00000381551 1125 ntTSL 5 BASIC15.39■□□□□ 0.05
HOXC4P09017 TPM1-207ENST00000403994 1049 ntAPPRIS ALT1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 AL354710.2-201ENST00000468244 550 ntTSL 4 BASIC15.39■□□□□ 0.05
HOXC4P09017 ZNF7-206ENST00000528130 1134 ntTSL 5 BASIC15.39■□□□□ 0.05
HOXC4P09017 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC15.39■□□□□ 0.05
HOXC4P09017 GABARAPL1-217ENST00000545887 571 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
HOXC4P09017 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC15.39■□□□□ 0.05
HOXC4P09017 AC009486.1-201ENST00000569860 813 ntBASIC15.39■□□□□ 0.05
HOXC4P09017 SNHG15-207ENST00000582727 1039 ntTSL 2 BASIC15.39■□□□□ 0.05
HOXC4P09017 UBL5-208ENST00000593087 320 ntTSL 3 BASIC15.39■□□□□ 0.05
HOXC4P09017 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC15.39■□□□□ 0.05
HOXC4P09017 LINC01515-215ENST00000608678 854 ntTSL 5 BASIC15.39■□□□□ 0.05
HOXC4P09017 Metazoa_SRP.80-201ENST00000619894 320 ntBASIC15.39■□□□□ 0.05
HOXC4P09017 AC024909.3-201ENST00000611513 2257 ntBASIC15.39■□□□□ 0.05
HOXC4P09017 UBA6-AS1-201ENST00000498917 1445 ntTSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 WT1-209ENST00000530998 2421 ntTSL 2 BASIC15.39■□□□□ 0.05
HOXC4P09017 TBC1D30-203ENST00000539867 2594 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 ZNF697-201ENST00000421812 5041 ntAPPRIS P1 TSL 3 BASIC15.39■□□□□ 0.05
HOXC4P09017 NDUFS2-201ENST00000367993 2042 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 HSPA1A-201ENST00000375651 2483 ntAPPRIS P1 BASIC15.39■□□□□ 0.05
HOXC4P09017 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 LENG8-202ENST00000376514 5146 ntAPPRIS ALT2 TSL 5 BASIC15.39■□□□□ 0.05
HOXC4P09017 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 MRPL11-201ENST00000310999 1605 ntAPPRIS P1 TSL 1 (best) BASIC15.39■□□□□ 0.05
HOXC4P09017 PPP3CA-203ENST00000394854 4685 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HOXC4P09017 NOMO2-202ENST00000381474 3911 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
HOXC4P09017 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HOXC4P09017 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HOXC4P09017 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HOXC4P09017 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC15.38■□□□□ 0.05
HOXC4P09017 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HOXC4P09017 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HOXC4P09017 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC15.38■□□□□ 0.05
HOXC4P09017 POLL-217ENST00000628479 1953 ntTSL 5 BASIC15.38■□□□□ 0.05
HOXC4P09017 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC15.38■□□□□ 0.05
HOXC4P09017 NELFA-203ENST00000411638 2199 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HOXC4P09017 ZFYVE28-208ENST00000511071 3273 ntAPPRIS ALT2 TSL 5 BASIC15.38■□□□□ 0.05
HOXC4P09017 RHOT1-201ENST00000333942 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HOXC4P09017 SLC4A5-203ENST00000377632 3123 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HOXC4P09017 JRK-211ENST00000615982 2823 ntAPPRIS ALT2 TSL 1 (best) BASIC15.38■□□□□ 0.05
HOXC4P09017 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC15.38■□□□□ 0.05
HOXC4P09017 TNFRSF12A-202ENST00000341627 881 ntTSL 1 (best) BASIC15.38■□□□□ 0.05
HOXC4P09017 CLCN6-207ENST00000376497 814 ntTSL 3 BASIC15.38■□□□□ 0.05
HOXC4P09017 BRF1-202ENST00000379932 884 ntTSL 5 BASIC15.38■□□□□ 0.05
HOXC4P09017 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC15.38■□□□□ 0.05
HOXC4P09017 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC15.38■□□□□ 0.05
HOXC4P09017 ECSIT-203ENST00000417981 970 ntTSL 2 BASIC15.38■□□□□ 0.05
Retrieved 100 of 98,524 protein–RNA pairs in 70.5 ms