Protein–RNA interactions for Protein: P01909

HLA-DQA1, HLA class II histocompatibility antigen, DQ alpha 1 chain, humanhuman

Predictions only

Length 254 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DQA1P01909 WDR1-203ENST00000382452 3142 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 GREM1-202ENST00000560830 2648 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 ZNF414-201ENST00000255616 1178 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 RHEBL1-201ENST00000301068 1210 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 DNAJC4-201ENST00000321460 1015 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 CAVIN1-201ENST00000357037 3828 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 RPA2-202ENST00000373909 1162 ntTSL 3 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 BECN2-201ENST00000419583 1296 ntAPPRIS P1 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 FAM210CP-201ENST00000445714 574 ntBASIC12.06□□□□□ -0.48
HLA-DQA1P01909 NUS1P1-201ENST00000446295 882 ntBASIC12.06□□□□□ -0.48
HLA-DQA1P01909 DMKN-215ENST00000451297 1111 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 AL356805.1-201ENST00000556383 341 ntTSL 3 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 AC087388.1-201ENST00000571370 1112 ntBASIC12.06□□□□□ -0.48
HLA-DQA1P01909 LINC00092-202ENST00000580908 580 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 MIR2117HG-201ENST00000588060 506 ntTSL 4 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 AC020911.2-202ENST00000588945 593 ntTSL 3 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 DHRS2-210ENST00000611765 1287 ntAPPRIS ALT2 TSL 2 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 NOX5-203ENST00000448182 2498 ntAPPRIS ALT2 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 SPG11-210ENST00000558319 6426 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 ATCAY-201ENST00000450849 5070 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 IL17RD-203ENST00000463523 2348 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 ZNF541-203ENST00000391901 4580 ntAPPRIS P2 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 LONP1-202ENST00000540670 3002 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 KCTD7-201ENST00000275532 4795 ntTSL 4 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 INPP5B-204ENST00000373026 3230 ntAPPRIS ALT2 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 LIN9-201ENST00000328205 3567 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 DPYSL2-204ENST00000521913 4805 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 MED4-201ENST00000258648 2022 ntAPPRIS P3 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 RPRD1A-201ENST00000357384 1850 ntAPPRIS P1 TSL 5 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC12.06□□□□□ -0.48
HLA-DQA1P01909 CBFA2T3-201ENST00000268679 4477 ntAPPRIS P4 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 AP1M1-202ENST00000429941 1578 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 TNS2-202ENST00000314276 4944 ntAPPRIS P4 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 PHF8-202ENST00000338154 6062 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 TEAD3-202ENST00000402886 2729 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 HSD17B4-206ENST00000504811 2740 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 AMACR-203ENST00000382072 2919 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 AC125634.1-201ENST00000438758 1403 ntBASIC12.05□□□□□ -0.48
HLA-DQA1P01909 ZNF790-207ENST00000614179 2361 ntAPPRIS P1 TSL 3 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 AMOTL2-201ENST00000249883 4488 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 FGFR3-203ENST00000352904 3733 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 AL353803.2-201ENST00000436510 1846 ntTSL 5 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 SMARCA2-208ENST00000382194 5679 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 ITGAM-202ENST00000544665 4718 ntAPPRIS ALT1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 DHX36-213ENST00000496811 6733 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 UXT-202ENST00000335890 701 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 TBPL1-203ENST00000367871 808 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 ABCD1-202ENST00000370129 1016 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 WDR53-204ENST00000433160 887 ntTSL 5 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 AL513320.1-201ENST00000435049 622 ntTSL 3 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 LINC01582-202ENST00000561215 452 ntTSL 4 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 FAM57B-201ENST00000279389 1481 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 POLD4-205ENST00000529704 1486 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 SHISA5-219ENST00000612611 1677 ntTSL 5 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 ZNF785-202ENST00000470110 2867 ntAPPRIS ALT2 TSL 2 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 THBS2-206ENST00000617924 5280 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 GTF2IRD1-205ENST00000476977 5868 ntTSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 AC140479.7-201ENST00000636301 2332 ntBASIC12.05□□□□□ -0.48
HLA-DQA1P01909 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 ZACN-201ENST00000334586 1335 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 RPLP0-219ENST00000551150 1344 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 SRRM2-AS1-203ENST00000571305 1344 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 FBXL19-204ENST00000471231 3641 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 ERLIN2-205ENST00000518586 2623 ntTSL 2 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 KDELC2-201ENST00000323468 4312 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 EMD-202ENST00000369842 1379 ntAPPRIS P1 TSL 1 (best) BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 KRT8P44-201ENST00000441609 1350 ntBASIC12.05□□□□□ -0.48
HLA-DQA1P01909 AC243591.1-201ENST00000452967 1364 ntBASIC12.05□□□□□ -0.48
HLA-DQA1P01909 PAG1-201ENST00000220597 10744 ntAPPRIS P1 TSL 2 BASIC12.05□□□□□ -0.48
HLA-DQA1P01909 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC12.04□□□□□ -0.48
HLA-DQA1P01909 SLC4A7-213ENST00000454389 4159 ntAPPRIS ALT2 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DQA1P01909 RBPMS-202ENST00000320203 3110 ntAPPRIS P3 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DQA1P01909 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
HLA-DQA1P01909 IRAK3-201ENST00000261233 8663 ntAPPRIS P1 TSL 1 (best) BASIC12.04□□□□□ -0.48
Retrieved 100 of 98,524 protein–RNA pairs in 35.5 ms