Protein–RNA interactions for Protein: O95628

CNOT4, CCR4-NOT transcription complex subunit 4, humanhuman

Known RBP Predictions only

Length 575 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4O95628 ZNF408-201ENST00000311764 2442 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CNOT4O95628 LINC00554-201ENST00000564841 3011 ntBASIC14.22□□□□□ -0.13
CNOT4O95628 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
CNOT4O95628 TMEM140-201ENST00000275767 1997 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CNOT4O95628 C15orf52-202ENST00000397536 4717 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
CNOT4O95628 TBL2-205ENST00000432538 1573 ntTSL 2 BASIC14.22□□□□□ -0.13
CNOT4O95628 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
CNOT4O95628 LHX5-201ENST00000261731 2939 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 KDM3A-201ENST00000312912 4886 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.13
CNOT4O95628 PDCD1-201ENST00000334409 2114 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 CLPTM1L-209ENST00000507807 1740 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 IKZF4-206ENST00000547791 1712 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 BX276092.9-202ENST00000636096 1722 ntAPPRIS P5 TSL 5 BASIC14.21□□□□□ -0.13
CNOT4O95628 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 SPINT1-202ENST00000562057 2456 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 VSIG10-202ENST00000359236 4946 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 LHCGR-204ENST00000405626 2073 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
CNOT4O95628 GPER1-202ENST00000397088 2639 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 MPL-202ENST00000413998 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 GGT5-203ENST00000398292 2408 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 AC110813.1-201ENST00000507934 2209 ntTSL 2 BASIC14.21□□□□□ -0.13
CNOT4O95628 AP001282.1-201ENST00000531301 1499 ntBASIC14.21□□□□□ -0.13
CNOT4O95628 MUC1-201ENST00000337604 859 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 RNF186-201ENST00000375121 1250 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
CNOT4O95628 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC14.21□□□□□ -0.13
CNOT4O95628 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC14.21□□□□□ -0.13
CNOT4O95628 AC114956.2-201ENST00000512498 572 ntTSL 4 BASIC14.21□□□□□ -0.13
CNOT4O95628 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC14.21□□□□□ -0.13
CNOT4O95628 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.21□□□□□ -0.13
CNOT4O95628 AC027307.3-201ENST00000594262 1100 ntBASIC14.21□□□□□ -0.13
CNOT4O95628 TEX28P1-201ENST00000613479 1221 ntBASIC14.21□□□□□ -0.13
CNOT4O95628 TEX28P2-201ENST00000617764 1221 ntBASIC14.21□□□□□ -0.13
CNOT4O95628 NF2-210ENST00000413209 4733 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 PCIF1-201ENST00000372409 2747 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 KMT2E-202ENST00000311117 6874 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 ANXA4-202ENST00000409920 1414 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 AC100757.3-201ENST00000622361 1406 ntBASIC14.21□□□□□ -0.13
CNOT4O95628 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
CNOT4O95628 FAM53A-201ENST00000308132 2802 ntAPPRIS P1 TSL 2 BASIC14.21□□□□□ -0.14
CNOT4O95628 SH3BP5-202ENST00000383791 2822 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CNOT4O95628 PER1-201ENST00000317276 4707 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CNOT4O95628 EXD3-203ENST00000465160 1585 ntTSL 2 BASIC14.21□□□□□ -0.14
CNOT4O95628 IQCC-202ENST00000537469 2252 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
CNOT4O95628 ALOX12P2-203ENST00000570921 1945 ntBASIC14.21□□□□□ -0.14
CNOT4O95628 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.21□□□□□ -0.14
CNOT4O95628 NDFIP2-201ENST00000218652 4625 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
CNOT4O95628 PIK3CD-206ENST00000536656 5483 ntTSL 5 BASIC14.21□□□□□ -0.14
CNOT4O95628 PIK3CD-208ENST00000628140 5483 ntTSL 5 BASIC14.21□□□□□ -0.14
CNOT4O95628 SP100-204ENST00000409341 1898 ntTSL 1 (best) BASIC14.21□□□□□ -0.14
CNOT4O95628 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.14
CNOT4O95628 CLCNKB-204ENST00000619181 1544 ntTSL 5 BASIC14.2□□□□□ -0.14
CNOT4O95628 UAP1L1-202ENST00000409858 3365 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 ACTG1-208ENST00000575087 2001 ntAPPRIS P1 TSL 5 BASIC14.2□□□□□ -0.14
CNOT4O95628 TRPC3-202ENST00000379645 3548 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 OSBP2-201ENST00000332585 4340 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 LIMS2-208ENST00000410011 2335 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 RAD23B-201ENST00000358015 4119 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC14.2□□□□□ -0.14
CNOT4O95628 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 GLG1-202ENST00000422840 4748 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
CNOT4O95628 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC14.2□□□□□ -0.14
CNOT4O95628 C1QTNF1-208ENST00000580474 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 AC006449.6-201ENST00000612330 2296 ntBASIC14.2□□□□□ -0.14
CNOT4O95628 TBC1D16-209ENST00000576768 6342 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 MUL1-201ENST00000264198 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 ZSCAN18-208ENST00000595944 1768 ntTSL 2 BASIC14.2□□□□□ -0.14
CNOT4O95628 BX088651.4-201ENST00000435586 2579 ntTSL 2 BASIC14.2□□□□□ -0.14
CNOT4O95628 SAP130-203ENST00000357702 4173 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 CCDC116-203ENST00000607942 1913 ntAPPRIS ALT2 TSL 2 BASIC14.2□□□□□ -0.14
CNOT4O95628 MYB-203ENST00000341911 3672 ntAPPRIS ALT1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 SSH3-201ENST00000308127 2871 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.2□□□□□ -0.14
CNOT4O95628 MIR648-201ENST00000385046 94 ntBASIC14.2□□□□□ -0.14
CNOT4O95628 AL080243.2-201ENST00000418783 582 ntBASIC14.2□□□□□ -0.14
CNOT4O95628 RCAN3-204ENST00000425530 997 ntTSL 5 BASIC14.2□□□□□ -0.14
CNOT4O95628 PRKAG2-AS1-202ENST00000467458 1064 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 SSBP1-214ENST00000498107 636 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.2□□□□□ -0.14
CNOT4O95628 AL139349.1-201ENST00000530479 577 ntTSL 4 BASIC14.2□□□□□ -0.14
CNOT4O95628 MIR210HG-203ENST00000533920 816 ntTSL 2 BASIC14.2□□□□□ -0.14
CNOT4O95628 TMSB15B-204ENST00000540220 665 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 TRMT112-206ENST00000544844 1106 ntAPPRIS P3 TSL 1 (best) BASIC14.2□□□□□ -0.14
CNOT4O95628 TMSB15B-205ENST00000563257 590 ntTSL 4 BASIC14.2□□□□□ -0.14
CNOT4O95628 MPI-209ENST00000564003 1195 ntTSL 2 BASIC14.2□□□□□ -0.14
CNOT4O95628 PPP6R1-201ENST00000412770 3961 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 33.3 ms