Protein–RNA interactions for Protein: O95243

MBD4, Methyl-CpG-binding domain protein 4, humanhuman

Predictions only

Length 580 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MBD4O95243 MLF1-206ENST00000471745 1266 ntTSL 2 BASIC18.92■□□□□ 0.62
MBD4O95243 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC18.92■□□□□ 0.62
MBD4O95243 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC18.92■□□□□ 0.62
MBD4O95243 RARRES2P5-201ENST00000564013 466 ntBASIC18.92■□□□□ 0.62
MBD4O95243 AC087294.1-201ENST00000580291 1152 ntTSL 2 BASIC18.92■□□□□ 0.62
MBD4O95243 QRICH1-201ENST00000357496 3083 ntAPPRIS P1 TSL 2 BASIC18.92■□□□□ 0.62
MBD4O95243 ITGB1BP1-204ENST00000360635 4859 ntAPPRIS P1 TSL 5 BASIC18.92■□□□□ 0.62
MBD4O95243 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC18.92■□□□□ 0.62
MBD4O95243 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC18.92■□□□□ 0.62
MBD4O95243 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC18.92■□□□□ 0.62
MBD4O95243 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC18.92■□□□□ 0.62
MBD4O95243 COL4A3BP-203ENST00000380494 5651 ntTSL 2 BASIC18.92■□□□□ 0.62
MBD4O95243 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MBD4O95243 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MBD4O95243 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC18.92■□□□□ 0.62
MBD4O95243 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC18.92■□□□□ 0.62
MBD4O95243 PPP4R3A-205ENST00000554684 4108 ntAPPRIS P1 TSL 1 (best) BASIC18.92■□□□□ 0.62
MBD4O95243 CD55-204ENST00000367064 2760 ntAPPRIS P3 TSL 1 (best) BASIC18.92■□□□□ 0.62
MBD4O95243 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC18.91■□□□□ 0.62
MBD4O95243 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
MBD4O95243 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
MBD4O95243 PLAA-205ENST00000520884 2041 ntTSL 2 BASIC18.91■□□□□ 0.62
MBD4O95243 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MBD4O95243 SEPT9-202ENST00000423034 3984 ntAPPRIS ALT1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MBD4O95243 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC18.91■□□□□ 0.62
MBD4O95243 NLGN2-201ENST00000302926 4642 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MBD4O95243 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MBD4O95243 TJP1-212ENST00000614355 6977 ntAPPRIS ALT2 TSL 5 BASIC18.91■□□□□ 0.62
MBD4O95243 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC18.91■□□□□ 0.62
MBD4O95243 MEP1AP4-201ENST00000423244 1087 ntBASIC18.91■□□□□ 0.62
MBD4O95243 TGFA-205ENST00000444975 985 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
MBD4O95243 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC18.91■□□□□ 0.62
MBD4O95243 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC18.91■□□□□ 0.62
MBD4O95243 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC18.91■□□□□ 0.62
MBD4O95243 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC18.91■□□□□ 0.62
MBD4O95243 AC131235.3-202ENST00000608135 362 ntTSL 5 BASIC18.91■□□□□ 0.62
MBD4O95243 AC099568.2-201ENST00000609194 695 ntBASIC18.91■□□□□ 0.62
MBD4O95243 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.91■□□□□ 0.62
MBD4O95243 ZFP3-201ENST00000318833 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MBD4O95243 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
MBD4O95243 SCAF8-201ENST00000367178 5057 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
MBD4O95243 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC18.91■□□□□ 0.62
MBD4O95243 JPH2-202ENST00000372980 4787 ntAPPRIS P1 TSL 5 BASIC18.91■□□□□ 0.62
MBD4O95243 ALOX12-AS1-201ENST00000399540 1730 ntTSL 2 BASIC18.91■□□□□ 0.62
MBD4O95243 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
MBD4O95243 DEK-201ENST00000244776 1441 ntTSL 2 BASIC18.91■□□□□ 0.62
MBD4O95243 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC18.91■□□□□ 0.62
MBD4O95243 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
MBD4O95243 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC18.91■□□□□ 0.62
MBD4O95243 ADRB1-201ENST00000369295 2853 ntAPPRIS P1 BASIC18.91■□□□□ 0.62
MBD4O95243 ASPM-201ENST00000294732 6132 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
MBD4O95243 LINC00221-202ENST00000619530 1499 ntTSL 2 BASIC18.9■□□□□ 0.62
MBD4O95243 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MBD4O95243 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC18.9■□□□□ 0.62
MBD4O95243 KCNK3-201ENST00000302909 6162 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MBD4O95243 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC18.9■□□□□ 0.62
MBD4O95243 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MBD4O95243 TMEM229B-201ENST00000357461 4068 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
MBD4O95243 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MBD4O95243 LST1-202ENST00000303757 604 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MBD4O95243 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC18.9■□□□□ 0.62
MBD4O95243 MRPS6-201ENST00000399312 990 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MBD4O95243 DGCR5-201ENST00000399539 862 ntBASIC18.9■□□□□ 0.62
MBD4O95243 RAB34-206ENST00000415040 1293 ntTSL 2 BASIC18.9■□□□□ 0.62
MBD4O95243 TOMM22P5-201ENST00000416399 439 ntBASIC18.9■□□□□ 0.62
MBD4O95243 RPSAP31-202ENST00000445165 716 ntTSL 2 BASIC18.9■□□□□ 0.62
MBD4O95243 RHOA-206ENST00000454011 889 ntTSL 2 BASIC18.9■□□□□ 0.62
MBD4O95243 RN7SL692P-201ENST00000464677 288 ntBASIC18.9■□□□□ 0.62
MBD4O95243 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC18.9■□□□□ 0.62
MBD4O95243 HHEX-203ENST00000492654 808 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MBD4O95243 EEF1D-207ENST00000524624 1084 ntAPPRIS ALT2 TSL 5 BASIC18.9■□□□□ 0.62
MBD4O95243 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.9■□□□□ 0.62
MBD4O95243 AC123567.1-201ENST00000548294 1261 ntBASIC18.9■□□□□ 0.62
MBD4O95243 COQ6-210ENST00000554920 649 ntTSL 3 BASIC18.9■□□□□ 0.62
MBD4O95243 DUSP13-212ENST00000605915 1015 ntTSL 5 BASIC18.9■□□□□ 0.62
MBD4O95243 AC012645.4-201ENST00000610691 1061 ntBASIC18.9■□□□□ 0.62
MBD4O95243 MIR8072-201ENST00000614241 80 ntBASIC18.9■□□□□ 0.62
MBD4O95243 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
MBD4O95243 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC18.9■□□□□ 0.62
MBD4O95243 SLC8A3-202ENST00000356921 5250 ntAPPRIS P3 TSL 1 (best) BASIC18.9■□□□□ 0.62
MBD4O95243 MFF-202ENST00000337110 1760 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
MBD4O95243 ZNF628-201ENST00000391718 3177 ntAPPRIS ALT2 BASIC18.9■□□□□ 0.62
MBD4O95243 SOCS2-212ENST00000622746 2881 ntAPPRIS P1 TSL 3 BASIC18.9■□□□□ 0.62
MBD4O95243 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC18.9■□□□□ 0.62
MBD4O95243 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
MBD4O95243 CLK3P2-201ENST00000427566 1453 ntBASIC18.9■□□□□ 0.62
MBD4O95243 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC18.89■□□□□ 0.62
MBD4O95243 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC18.89■□□□□ 0.62
MBD4O95243 HS6ST2-204ENST00000521489 2607 ntTSL 5 BASIC18.89■□□□□ 0.62
MBD4O95243 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC18.89■□□□□ 0.62
MBD4O95243 RFC5-204ENST00000454402 1655 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MBD4O95243 ZNF707-223ENST00000532205 2865 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
MBD4O95243 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MBD4O95243 ALOX15B-205ENST00000573359 1809 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
MBD4O95243 CHAT-205ENST00000395562 2528 ntAPPRIS ALT2 TSL 1 (best) BASIC18.89■□□□□ 0.61
MBD4O95243 PXMP4-202ENST00000344022 989 ntTSL 2 BASIC18.89■□□□□ 0.61
MBD4O95243 ADIRF-201ENST00000372013 917 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
MBD4O95243 RAC2-203ENST00000405484 842 ntAPPRIS ALT1 TSL 3 BASIC18.89■□□□□ 0.61
MBD4O95243 FADS2-205ENST00000517839 469 ntTSL 3 BASIC18.89■□□□□ 0.61
MBD4O95243 IL32-215ENST00000529550 772 ntAPPRIS P4 TSL 3 BASIC18.89■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 32.5 ms