Protein–RNA interactions for Protein: O15457

MSH4, MutS protein homolog 4, humanhuman

Predictions only

Length 936 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH4O15457 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC17.79■□□□□ 0.44
MSH4O15457 FAM197Y5-201ENST00000423213 765 ntTSL 5 BASIC17.79■□□□□ 0.44
MSH4O15457 COX20P2-201ENST00000452636 358 ntBASIC17.79■□□□□ 0.44
MSH4O15457 PSEN2-206ENST00000472139 1163 ntTSL 5 BASIC17.79■□□□□ 0.44
MSH4O15457 AC009902.2-201ENST00000518880 620 ntTSL 4 BASIC17.79■□□□□ 0.44
MSH4O15457 C11orf98-202ENST00000525675 405 ntTSL 2 BASIC17.79■□□□□ 0.44
MSH4O15457 AC233702.7-201ENST00000536958 924 ntTSL 5 BASIC17.79■□□□□ 0.44
MSH4O15457 RARRES2P5-201ENST00000564013 466 ntBASIC17.79■□□□□ 0.44
MSH4O15457 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC17.79■□□□□ 0.44
MSH4O15457 LITAF-218ENST00000576036 603 ntAPPRIS P1 TSL 4 BASIC17.79■□□□□ 0.44
MSH4O15457 AL662799.1-202ENST00000614205 422 ntBASIC17.79■□□□□ 0.44
MSH4O15457 PDCD6-212ENST00000614778 1050 ntTSL 2 BASIC17.79■□□□□ 0.44
MSH4O15457 TAMM41-212ENST00000630288 607 ntTSL 2 BASIC17.79■□□□□ 0.44
MSH4O15457 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSH4O15457 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC17.79■□□□□ 0.44
MSH4O15457 FDPS-202ENST00000368356 1431 ntAPPRIS P3 TSL 2 BASIC17.79■□□□□ 0.44
MSH4O15457 TPD52L2-203ENST00000348257 2237 ntAPPRIS ALT1 TSL 1 (best) BASIC17.79■□□□□ 0.44
MSH4O15457 CORO6-201ENST00000345068 2603 ntAPPRIS P2 TSL 5 BASIC17.79■□□□□ 0.44
MSH4O15457 GRAMD1A-211ENST00000599564 2825 ntTSL 5 BASIC17.79■□□□□ 0.44
MSH4O15457 C16orf58-211ENST00000570164 2783 ntAPPRIS ALT1 TSL 5 BASIC17.79■□□□□ 0.44
MSH4O15457 KLC2-203ENST00000394066 2591 ntTSL 2 BASIC17.79■□□□□ 0.44
MSH4O15457 AL121845.3-201ENST00000490623 3119 ntTSL 5 BASIC17.78■□□□□ 0.44
MSH4O15457 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC17.78■□□□□ 0.44
MSH4O15457 MIDN-201ENST00000300952 3790 ntAPPRIS P2 TSL 5 BASIC17.78■□□□□ 0.44
MSH4O15457 SNX14-210ENST00000505648 3193 ntTSL 2 BASIC17.78■□□□□ 0.44
MSH4O15457 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH4O15457 RPL18A-201ENST00000222247 665 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH4O15457 ACTA1-201ENST00000366683 1122 ntTSL 5 BASIC17.78■□□□□ 0.44
MSH4O15457 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH4O15457 AL161638.1-201ENST00000420354 481 ntTSL 3 BASIC17.78■□□□□ 0.44
MSH4O15457 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH4O15457 AC147067.1-201ENST00000466692 579 ntTSL 2 BASIC17.78■□□□□ 0.44
MSH4O15457 AC055876.2-201ENST00000531834 546 ntBASIC17.78■□□□□ 0.44
MSH4O15457 COX11-202ENST00000571584 1108 ntTSL 2 BASIC17.78■□□□□ 0.44
MSH4O15457 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC17.78■□□□□ 0.44
MSH4O15457 MARCH2-206ENST00000601283 747 ntTSL 3 BASIC17.78■□□□□ 0.44
MSH4O15457 AC005391.1-201ENST00000613285 341 ntTSL 3 BASIC17.78■□□□□ 0.44
MSH4O15457 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC17.78■□□□□ 0.44
MSH4O15457 LAD1-201ENST00000367313 2336 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MSH4O15457 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC17.78■□□□□ 0.44
MSH4O15457 ZFP28-201ENST00000301318 4096 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH4O15457 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH4O15457 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC17.78■□□□□ 0.44
MSH4O15457 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC17.78■□□□□ 0.44
MSH4O15457 FAM76B-201ENST00000358780 3952 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
MSH4O15457 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MSH4O15457 AL391825.1-201ENST00000457671 1364 ntBASIC17.78■□□□□ 0.44
MSH4O15457 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
MSH4O15457 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC17.78■□□□□ 0.44
MSH4O15457 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC17.77■□□□□ 0.44
MSH4O15457 CARS-203ENST00000397111 2685 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
MSH4O15457 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC17.77■□□□□ 0.44
MSH4O15457 YY1-201ENST00000262238 6697 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSH4O15457 KLK8-211ENST00000600767 1324 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
MSH4O15457 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSH4O15457 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSH4O15457 TMEM26-AS1-201ENST00000389640 863 ntTSL 5 BASIC17.77■□□□□ 0.44
MSH4O15457 AC104135.1-201ENST00000418001 763 ntTSL 5 BASIC17.77■□□□□ 0.44
MSH4O15457 MEP1AP4-201ENST00000423244 1087 ntBASIC17.77■□□□□ 0.44
MSH4O15457 TAF8-206ENST00000472818 719 ntTSL 2 BASIC17.77■□□□□ 0.44
MSH4O15457 AC123777.1-201ENST00000534827 1247 ntTSL 3 BASIC17.77■□□□□ 0.44
MSH4O15457 YEATS4-202ENST00000548020 1100 ntTSL 2 BASIC17.77■□□□□ 0.44
MSH4O15457 HDDC2-203ENST00000608284 538 ntTSL 3 BASIC17.77■□□□□ 0.44
MSH4O15457 AC099568.2-201ENST00000609194 695 ntBASIC17.77■□□□□ 0.44
MSH4O15457 RBP1-207ENST00000619087 516 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSH4O15457 EIF6-209ENST00000621148 1054 ntAPPRIS P1 TSL 3 BASIC17.77■□□□□ 0.44
MSH4O15457 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
MSH4O15457 CICP13-201ENST00000422015 2789 ntBASIC17.77■□□□□ 0.43
MSH4O15457 FGF11-201ENST00000293829 3063 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MSH4O15457 POMK-203ENST00000614426 1527 ntAPPRIS P1 TSL 4 BASIC17.77■□□□□ 0.43
MSH4O15457 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC17.77■□□□□ 0.43
MSH4O15457 AC022188.1-201ENST00000620960 1664 ntBASIC17.77■□□□□ 0.43
MSH4O15457 ZMYM3-203ENST00000373981 1841 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
MSH4O15457 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC17.77■□□□□ 0.43
MSH4O15457 SCN3B-202ENST00000392770 6061 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MSH4O15457 LCK-202ENST00000336890 2117 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MSH4O15457 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC17.77■□□□□ 0.43
MSH4O15457 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
MSH4O15457 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
MSH4O15457 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH4O15457 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
MSH4O15457 AC012507.2-203ENST00000415628 1765 ntTSL 3 BASIC17.76■□□□□ 0.43
MSH4O15457 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSH4O15457 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH4O15457 CLK3P2-201ENST00000427566 1453 ntBASIC17.76■□□□□ 0.43
MSH4O15457 AC138969.3-201ENST00000546612 1459 ntBASIC17.76■□□□□ 0.43
MSH4O15457 AC138932.2-201ENST00000548268 1459 ntBASIC17.76■□□□□ 0.43
MSH4O15457 AC126755.4-201ENST00000549796 1459 ntBASIC17.76■□□□□ 0.43
MSH4O15457 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSH4O15457 TMED1-201ENST00000214869 1340 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH4O15457 STK17A-201ENST00000319357 3368 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH4O15457 DTX2-201ENST00000324432 2769 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH4O15457 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH4O15457 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC17.76■□□□□ 0.43
MSH4O15457 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH4O15457 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC17.76■□□□□ 0.43
MSH4O15457 MBD1-202ENST00000269471 2980 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
MSH4O15457 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
MSH4O15457 AC096536.1-201ENST00000443284 440 ntTSL 2 BASIC17.76■□□□□ 0.43
MSH4O15457 TP53TG3HP-202ENST00000569755 579 ntBASIC17.76■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 40.2 ms