Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 ALKBH6-202ENST00000378875 973 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 CCDC74A-202ENST00000409856 1298 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 FAM8A3P-201ENST00000427218 844 ntBASIC15.73■□□□□ 0.11
MKS1Q9NXB0 SNCA-209ENST00000506244 570 ntAPPRIS P1 TSL 2 BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 EFCAB1-209ENST00000523092 648 ntTSL 2 BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 AC087276.3-201ENST00000526220 787 ntTSL 3 BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 AL049840.3-201ENST00000602669 611 ntBASIC15.73■□□□□ 0.11
MKS1Q9NXB0 AL773604.1-201ENST00000617417 272 ntBASIC15.73■□□□□ 0.11
MKS1Q9NXB0 TSPY4-205ENST00000640033 663 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 SLC6A11-201ENST00000254488 4296 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 FKRP-201ENST00000318584 3332 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 LIMS2-217ENST00000545738 1730 ntTSL 5 BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 MGME1-203ENST00000377710 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 AJ011931.1-201ENST00000618749 2492 ntBASIC15.73■□□□□ 0.11
MKS1Q9NXB0 ZNF134-201ENST00000396161 4914 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 AHRR-201ENST00000316418 5661 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 TATDN3-214ENST00000532324 1381 ntTSL 2 BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 GCM2-201ENST00000379491 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 NFATC4-213ENST00000554591 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
MKS1Q9NXB0 FEM1C-201ENST00000274457 5816 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 CRK-201ENST00000300574 3880 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 FOXB1-201ENST00000396057 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 RNF11-201ENST00000242719 3084 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 AK4-207ENST00000545314 6887 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 SLC25A37-206ENST00000519973 4823 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 STRA6-207ENST00000535552 2631 ntTSL 2 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 IL9R-202ENST00000369423 2032 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 CASZ1-202ENST00000377022 7936 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 CACNA2D2-203ENST00000423994 5329 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 AC025580.3-201ENST00000617932 1424 ntBASIC15.72■□□□□ 0.11
MKS1Q9NXB0 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 KLK8-202ENST00000320838 456 ntTSL 5 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 GSTO1-202ENST00000369713 972 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 ODF3B-205ENST00000428989 762 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 IGHV3-22-201ENST00000520721 359 ntBASIC15.72■□□□□ 0.11
MKS1Q9NXB0 SPCS2-207ENST00000530257 612 ntTSL 3 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 HNRNPUP1-201ENST00000554987 333 ntBASIC15.72■□□□□ 0.11
MKS1Q9NXB0 AL512357.1-201ENST00000557687 518 ntTSL 4 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 AC005606.1-201ENST00000567515 504 ntTSL 5 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 GABARAP-204ENST00000571253 837 ntTSL 2 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 AC097359.3-201ENST00000603982 1210 ntBASIC15.72■□□□□ 0.11
MKS1Q9NXB0 AC244517.5-205ENST00000623615 575 ntTSL 4 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 SYNRG-223ENST00000616179 4050 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 TRIM24-201ENST00000343526 8410 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 MARVELD1-201ENST00000285605 3221 ntAPPRIS P1 TSL 2 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 APBB2-204ENST00000502841 1681 ntTSL 2 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 C11orf16-202ENST00000525780 1685 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 DCBLD1-202ENST00000338728 3626 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 ALDH3A2-221ENST00000581518 2785 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 KIF25-202ENST00000354419 1510 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 DZIP1-204ENST00000376829 3738 ntAPPRIS P4 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 SRRT-217ENST00000618411 2893 ntAPPRIS ALT2 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 PHF10-205ENST00000612128 4395 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 NR1H3-211ENST00000441012 1637 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 ACTN2-207ENST00000546208 5103 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
MKS1Q9NXB0 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 ANAPC5-201ENST00000261819 2513 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 AL136982.4-201ENST00000437689 1740 ntBASIC15.71■□□□□ 0.11
MKS1Q9NXB0 MUTYH-209ENST00000448481 1706 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 NEO1-207ENST00000560262 4315 ntTSL 1 (best) BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 TMEM53-203ENST00000372242 1846 ntTSL 3 BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 PID1-202ENST00000392054 2745 ntTSL 2 BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 ARVCF-202ENST00000401994 2700 ntTSL 5 BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 MYO1D-201ENST00000318217 5563 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 KRT8P37-201ENST00000451609 1420 ntBASIC15.71■□□□□ 0.11
MKS1Q9NXB0 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 AL031284.1-201ENST00000419297 478 ntBASIC15.71■□□□□ 0.11
MKS1Q9NXB0 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 UBE2E1-AS1-201ENST00000426702 778 ntTSL 3 BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 PHKG1P2-201ENST00000457537 863 ntBASIC15.71■□□□□ 0.11
MKS1Q9NXB0 AC079776.4-201ENST00000511039 504 ntBASIC15.71■□□□□ 0.11
MKS1Q9NXB0 RNA5SP415-201ENST00000517246 115 ntBASIC15.71■□□□□ 0.11
MKS1Q9NXB0 CNOT8-225ENST00000524105 904 ntTSL 2 BASIC15.71■□□□□ 0.11
MKS1Q9NXB0 LDLRAD2-203ENST00000543870 1180 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 38.7 ms