Protein–RNA interactions for Protein: Q99567

NUP88, Nuclear pore complex protein Nup88, humanhuman

Predicted RBP Predictions only

Length 741 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88Q99567 AC092364.2-201ENST00000596710 2692 ntBASIC18.66■□□□□ 0.58
NUP88Q99567 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 GPC1-201ENST00000264039 3713 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 TMEM39B-201ENST00000336294 1813 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.65■□□□□ 0.58
NUP88Q99567 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC18.65■□□□□ 0.58
NUP88Q99567 TNFSF8-203ENST00000618336 1523 ntTSL 3 BASIC18.65■□□□□ 0.58
NUP88Q99567 UIMC1-201ENST00000377227 2570 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 SCYL1-214ENST00000533862 2570 ntTSL 5 BASIC18.65■□□□□ 0.58
NUP88Q99567 KCNQ2-209ENST00000625514 2925 ntTSL 5 BASIC18.65■□□□□ 0.58
NUP88Q99567 RASAL3-201ENST00000343625 3293 ntAPPRIS P2 TSL 2 BASIC18.65■□□□□ 0.58
NUP88Q99567 RGL2-247ENST00000497454 3278 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 F3-201ENST00000334047 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 TVP23B-202ENST00000476139 2989 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 LINC01118-203ENST00000479311 1588 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
NUP88Q99567 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 PCDHA3-201ENST00000522353 5260 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 AL807752.4-201ENST00000439076 580 ntTSL 2 BASIC18.65■□□□□ 0.58
NUP88Q99567 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC18.65■□□□□ 0.58
NUP88Q99567 KRBOX4-207ENST00000487081 1247 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.65■□□□□ 0.58
NUP88Q99567 AC093004.1-201ENST00000508850 424 ntBASIC18.65■□□□□ 0.58
NUP88Q99567 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC18.65■□□□□ 0.58
NUP88Q99567 TPRX2P-201ENST00000535362 881 ntBASIC18.65■□□□□ 0.58
NUP88Q99567 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC18.65■□□□□ 0.58
NUP88Q99567 SPIB-207ENST00000597855 564 ntTSL 4 BASIC18.65■□□□□ 0.58
NUP88Q99567 PHOSPHO2-207ENST00000616524 1253 ntAPPRIS P1 TSL 3 BASIC18.65■□□□□ 0.58
NUP88Q99567 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 FMNL3-202ENST00000352151 4006 ntAPPRIS P3 TSL 2 BASIC18.65■□□□□ 0.58
NUP88Q99567 HECTD1-201ENST00000399332 9134 ntAPPRIS P1 TSL 5 BASIC18.65■□□□□ 0.58
NUP88Q99567 CYP2T1P-202ENST00000641596 2535 ntBASIC18.65■□□□□ 0.58
NUP88Q99567 SLC7A15P-201ENST00000424028 1363 ntBASIC18.65■□□□□ 0.58
NUP88Q99567 SCP2-204ENST00000407246 2239 ntTSL 2 BASIC18.65■□□□□ 0.58
NUP88Q99567 CES4A-206ENST00000540579 1825 ntTSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 LTK-204ENST00000561619 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 DCLK2-201ENST00000296550 4265 ntAPPRIS P3 TSL 1 (best) BASIC18.65■□□□□ 0.58
NUP88Q99567 ACTL9-201ENST00000324436 1426 ntAPPRIS P1 BASIC18.65■□□□□ 0.58
NUP88Q99567 AC138969.3-201ENST00000546612 1459 ntBASIC18.65■□□□□ 0.58
NUP88Q99567 AC138932.2-201ENST00000548268 1459 ntBASIC18.65■□□□□ 0.58
NUP88Q99567 AC126755.4-201ENST00000549796 1459 ntBASIC18.65■□□□□ 0.58
NUP88Q99567 MBD1-207ENST00000398488 1512 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
NUP88Q99567 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC18.64■□□□□ 0.58
NUP88Q99567 DLX4-201ENST00000240306 2034 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.58
NUP88Q99567 BNIP3P1-202ENST00000550043 1585 ntBASIC18.64■□□□□ 0.58
NUP88Q99567 CYP4F3-202ENST00000585846 2056 ntAPPRIS ALT1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NUP88Q99567 FSTL3-206ENST00000592947 2144 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NUP88Q99567 PPAN-P2RY11-202ENST00000428358 2661 ntTSL 2 BASIC18.64■□□□□ 0.57
NUP88Q99567 SLC27A6-201ENST00000262462 3219 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NUP88Q99567 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC18.64■□□□□ 0.57
NUP88Q99567 VHLL-201ENST00000339922 676 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
NUP88Q99567 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC18.64■□□□□ 0.57
NUP88Q99567 ZNF593-202ENST00000374266 675 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NUP88Q99567 LYPLA2-201ENST00000374501 1117 ntTSL 2 BASIC18.64■□□□□ 0.57
NUP88Q99567 TRIM74-202ENST00000395244 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
NUP88Q99567 HRAS-202ENST00000397594 1099 ntTSL 2 BASIC18.64■□□□□ 0.57
NUP88Q99567 LINC01273-201ENST00000411453 685 ntTSL 2 BASIC18.64■□□□□ 0.57
NUP88Q99567 TRIM73-204ENST00000447409 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
NUP88Q99567 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NUP88Q99567 FXR1-221ENST00000491674 365 ntTSL 2 BASIC18.64■□□□□ 0.57
NUP88Q99567 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC18.64■□□□□ 0.57
NUP88Q99567 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC18.64■□□□□ 0.57
NUP88Q99567 AP001107.3-201ENST00000534065 544 ntTSL 4 BASIC18.64■□□□□ 0.57
NUP88Q99567 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC18.64■□□□□ 0.57
NUP88Q99567 PPP1R14A-203ENST00000587515 607 ntTSL 2 BASIC18.64■□□□□ 0.57
NUP88Q99567 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC18.64■□□□□ 0.57
NUP88Q99567 LINC01703-202ENST00000602806 595 ntTSL 3 BASIC18.64■□□□□ 0.57
NUP88Q99567 HIST1H2AB-201ENST00000615868 393 ntAPPRIS P1 BASIC18.64■□□□□ 0.57
NUP88Q99567 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC18.64■□□□□ 0.57
NUP88Q99567 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC18.64■□□□□ 0.57
NUP88Q99567 IER3IP1-202ENST00000639845 832 ntTSL 2 BASIC18.64■□□□□ 0.57
NUP88Q99567 TAF1B-201ENST00000263663 2387 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NUP88Q99567 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NUP88Q99567 FDPS-201ENST00000356657 1478 ntAPPRIS P3 TSL 1 (best) BASIC18.64■□□□□ 0.57
NUP88Q99567 GLUL-201ENST00000311223 4719 ntAPPRIS P1 TSL 1 (best) BASIC18.64■□□□□ 0.57
NUP88Q99567 GUCA1A-203ENST00000394237 2233 ntAPPRIS P1 TSL 2 BASIC18.64■□□□□ 0.57
NUP88Q99567 CTD-2194D22.4-201ENST00000514569 1635 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 EDN3-205ENST00000395654 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 AC104809.1-201ENST00000425110 2345 ntTSL 2 BASIC18.63■□□□□ 0.57
NUP88Q99567 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 NOMO1-207ENST00000610363 3765 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 TBC1D9B-202ENST00000356834 5173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 PDAP1-201ENST00000350498 2546 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 SLC43A3-203ENST00000395124 2617 ntAPPRIS P3 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 ZBTB9-201ENST00000395064 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 NRP1-203ENST00000374821 1988 ntTSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.57
NUP88Q99567 VCAN-204ENST00000502527 2087 ntAPPRIS ALT1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 H1FOO-201ENST00000324382 1067 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 ZDHHC12-201ENST00000372663 1129 ntAPPRIS P1 TSL 1 (best) BASIC18.63■□□□□ 0.57
NUP88Q99567 PGF-202ENST00000405431 666 ntTSL 5 BASIC18.63■□□□□ 0.57
Retrieved 100 of 98,524 protein–RNA pairs in 35.1 ms