Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 C16orf54-201ENST00000329410 2585 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 PLCB1-203ENST00000378641 7323 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 SYN1-201ENST00000295987 3299 ntAPPRIS P3 TSL 2 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 AC008969.1-201ENST00000550135 6438 ntTSL 2 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 CGREF1-205ENST00000404694 1376 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 VWA2-202ENST00000392982 2794 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 GPSM1-205ENST00000440944 3633 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 WDR20-202ENST00000322340 3060 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 FCN3-201ENST00000270879 1030 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 AURKAIP1-201ENST00000321751 798 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 FCN3-202ENST00000354982 997 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 CHFR-204ENST00000443047 2990 ntTSL 2 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 SMIM27-204ENST00000453396 1003 ntAPPRIS ALT2 TSL 3 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 MRVI1-AS1-203ENST00000529979 784 ntTSL 3 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 LRRC28-210ENST00000558879 581 ntTSL 4 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 AC018845.2-201ENST00000568326 409 ntBASIC14.37□□□□□ -0.11
PTP4A1Q93096 TYROBP-205ENST00000585901 620 ntTSL 3 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 AL590999.1-203ENST00000606829 542 ntTSL 4 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 APLP1-202ENST00000537454 2266 ntTSL 2 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 MECR-202ENST00000373791 2416 ntTSL 2 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 HTR7-201ENST00000277874 3028 ntAPPRIS P4 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 NPY5R-203ENST00000515560 3183 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 KIAA0319L-201ENST00000325722 4789 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 XPO1-201ENST00000401558 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 NKIRAS1-201ENST00000388759 2335 ntAPPRIS P2 TSL 3 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 ETV2-205ENST00000479824 1342 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 NDUFB2-AS1-201ENST00000465466 1648 ntTSL 2 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 GOLGA2P9-201ENST00000596977 1937 ntBASIC14.37□□□□□ -0.11
PTP4A1Q93096 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 SENP6-205ENST00000447266 6501 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 C15orf62-201ENST00000344320 2370 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 NFATC1-218ENST00000592223 2531 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 RHOXF1P3-203ENST00000640298 2668 ntTSL 5 BASIC14.37□□□□□ -0.11
PTP4A1Q93096 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 CYP2U1-201ENST00000332884 4944 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
PTP4A1Q93096 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
PTP4A1Q93096 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTP4A1Q93096 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
PTP4A1Q93096 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC14.36□□□□□ -0.11
PTP4A1Q93096 WBP4-201ENST00000379487 2623 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTP4A1Q93096 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC14.36□□□□□ -0.11
PTP4A1Q93096 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTP4A1Q93096 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTP4A1Q93096 DRG1-201ENST00000331457 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTP4A1Q93096 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC14.36□□□□□ -0.11
PTP4A1Q93096 AL691432.1-201ENST00000596308 1422 ntBASIC14.36□□□□□ -0.11
PTP4A1Q93096 TOR4A-201ENST00000357503 4148 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
PTP4A1Q93096 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTP4A1Q93096 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC14.36□□□□□ -0.11
PTP4A1Q93096 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTP4A1Q93096 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
PTP4A1Q93096 MIR940-201ENST00000401276 94 ntBASIC14.36□□□□□ -0.11
PTP4A1Q93096 C6orf47-AS1-203ENST00000422049 673 ntTSL 2 BASIC14.36□□□□□ -0.11
PTP4A1Q93096 AC013270.1-201ENST00000425578 440 ntTSL 2 BASIC14.36□□□□□ -0.11
PTP4A1Q93096 AL451069.2-201ENST00000428814 297 ntTSL 3 BASIC14.36□□□□□ -0.11
PTP4A1Q93096 AP000355.1-201ENST00000432032 480 ntTSL 5 BASIC14.36□□□□□ -0.11
PTP4A1Q93096 AC074386.1-202ENST00000463561 864 ntBASIC14.36□□□□□ -0.11
PTP4A1Q93096 MIR130B-201ENST00000498589 1093 ntTSL 5 BASIC14.36□□□□□ -0.11
PTP4A1Q93096 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC14.36□□□□□ -0.11
PTP4A1Q93096 KRT19P2-202ENST00000557173 1012 ntBASIC14.36□□□□□ -0.11
PTP4A1Q93096 R3HDM2-201ENST00000347140 4331 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTP4A1Q93096 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PTP4A1Q93096 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
PTP4A1Q93096 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC14.36□□□□□ -0.11
PTP4A1Q93096 VTN-201ENST00000226218 2149 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTP4A1Q93096 ILF3-AS1-201ENST00000591501 1983 ntBASIC14.36□□□□□ -0.11
PTP4A1Q93096 C18orf15-201ENST00000623680 2534 ntBASIC14.36□□□□□ -0.11
PTP4A1Q93096 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
PTP4A1Q93096 CC2D1B-202ENST00000371586 5642 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
PTP4A1Q93096 SLC44A2-203ENST00000586078 3784 ntTSL 5 BASIC14.35□□□□□ -0.11
PTP4A1Q93096 MECR-201ENST00000263702 1353 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTP4A1Q93096 SNRPF-201ENST00000266735 1389 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTP4A1Q93096 CASC2-203ENST00000435944 3270 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
PTP4A1Q93096 LGMN-211ENST00000555699 1728 ntTSL 5 BASIC14.35□□□□□ -0.11
PTP4A1Q93096 TONSL-203ENST00000613741 1713 ntTSL 5 BASIC14.35□□□□□ -0.11
PTP4A1Q93096 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTP4A1Q93096 WNT16-201ENST00000222462 3147 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTP4A1Q93096 IRAK1-203ENST00000369980 3666 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTP4A1Q93096 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.35□□□□□ -0.11
PTP4A1Q93096 CREB3L3-201ENST00000078445 2618 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTP4A1Q93096 AC091951.1-201ENST00000512854 2465 ntBASIC14.35□□□□□ -0.11
PTP4A1Q93096 RUNDC3B-202ENST00000338056 4099 ntTSL 2 BASIC14.35□□□□□ -0.11
PTP4A1Q93096 EPOP-201ENST00000621654 3719 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
PTP4A1Q93096 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTP4A1Q93096 PCDHA12-201ENST00000398631 5233 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
PTP4A1Q93096 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms