Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 H2BFWT-201ENST00000217926 894 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 TMEM120A-203ENST00000439537 1161 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 FUZ-207ENST00000526575 482 ntTSL 4 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 CHMP4A-204ENST00000530996 967 ntTSL 3 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 FOLR3-204ENST00000611028 820 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AC025048.6-201ENST00000634326 1161 ntBASIC4.97□□□□□ -1.61
SYNE1Q8NF91 TNK2-AS1-201ENST00000458180 2096 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 SLC18B1-201ENST00000275227 2368 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 RBPMS-204ENST00000397323 2941 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 ACOT7-204ENST00000377855 1614 ntAPPRIS P4 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 OSBP2-202ENST00000401475 2468 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 MCM3AP-AS1-202ENST00000420074 1947 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 SEPT8-204ENST00000378699 2289 ntTSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 ADM5-201ENST00000420022 1718 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 EPN1-203ENST00000411543 2621 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 MTFR2-203ENST00000420702 1793 ntAPPRIS P2 TSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 RCC1-202ENST00000373832 2424 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 NOL4-211ENST00000589544 2221 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 ALG5-201ENST00000239891 1154 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 SYCE1-202ENST00000343131 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 LEPROTL1-202ENST00000442880 908 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AP001995.1-201ENST00000531784 1157 ntTSL 4 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AC084125.2-203ENST00000532766 821 ntTSL 3 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 RAB35-202ENST00000534951 939 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 IL32-234ENST00000552936 713 ntAPPRIS ALT2 TSL 3 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 CHCHD2P3-201ENST00000603038 451 ntBASIC4.97□□□□□ -1.61
SYNE1Q8NF91 RHBDF1P1-201ENST00000427504 1941 ntBASIC4.97□□□□□ -1.61
SYNE1Q8NF91 FBLN2-207ENST00000492059 4193 ntAPPRIS P4 TSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 EFEMP1-202ENST00000394555 3024 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 SCARF1-201ENST00000263071 3443 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 PGAP3-211ENST00000619169 2094 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 CNP-201ENST00000393888 2583 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 PRDM5-212ENST00000515109 2259 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 HOXB6-203ENST00000484302 1960 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 C1QTNF2-201ENST00000393975 2414 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 ADK-202ENST00000372734 2083 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 IGHV3-7-201ENST00000390598 430 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AL606760.2-202ENST00000452466 524 ntTSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 HLA-V-204ENST00000476601 1289 ntBASIC4.97□□□□□ -1.61
SYNE1Q8NF91 CD81-207ENST00000481687 890 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AL079307.3-201ENST00000556114 283 ntBASIC4.97□□□□□ -1.61
SYNE1Q8NF91 MYMX-202ENST00000576476 682 ntAPPRIS P1 TSL 3 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 TPGS2-215ENST00000590842 1239 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AL589739.1-201ENST00000607720 493 ntBASIC4.97□□□□□ -1.61
SYNE1Q8NF91 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 PLEKHA4-202ENST00000355496 2614 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AL121758.1-201ENST00000488788 2714 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 DNAJA3-201ENST00000262375 2763 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AIFM3-201ENST00000399163 2309 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 GADL1-201ENST00000282538 3759 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 INPP5J-202ENST00000400294 2393 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 Z83844.1-201ENST00000455236 4904 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AL109910.2-201ENST00000607733 1953 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 JMJD4-201ENST00000366758 2595 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 SPG11-215ENST00000559193 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 KCNK7-203ENST00000394216 1563 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 CDH20-203ENST00000538374 2683 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 GABRD-218ENST00000640949 1684 ntTSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 GLG1-203ENST00000447066 3626 ntAPPRIS ALT2 TSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 ARHGAP36-201ENST00000276211 3083 ntAPPRIS P1 TSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 GPR148-201ENST00000309926 1267 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 LRRC30-201ENST00000383467 923 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 HIST2H2BA-202ENST00000430394 752 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 CYP2A7P1-201ENST00000595391 815 ntBASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AC239798.4-201ENST00000609879 700 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 MUS81-215ENST00000533035 2180 ntTSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AFF2-204ENST00000370458 1488 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 HRASLS5-206ENST00000540857 3032 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 LRFN5-201ENST00000298119 3723 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 VAT1-202ENST00000420567 1069 ntTSL 2 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 HOXB-AS1-201ENST00000435312 806 ntTSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AL158198.1-201ENST00000449143 380 ntTSL 3 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AL033519.3-201ENST00000450618 595 ntTSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 LCN10-203ENST00000474369 564 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AC119751.2-201ENST00000504529 210 ntBASIC4.97□□□□□ -1.61
SYNE1Q8NF91 TMEM161B-AS1-212ENST00000513011 833 ntTSL 3 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 PWWP2A-202ENST00000456329 3991 ntTSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 KCTD14-201ENST00000353172 1691 ntAPPRIS P3 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 P2RX6-201ENST00000401443 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 DYRK1B-205ENST00000597639 1806 ntTSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 A4GALT-202ENST00000381278 1935 ntAPPRIS P1 TSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 AC023355.1-202ENST00000612262 4242 ntTSL 5 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 PCDHB13-201ENST00000341948 5061 ntAPPRIS P1 BASIC4.97□□□□□ -1.61
SYNE1Q8NF91 VLDLR-202ENST00000382099 3240 ntAPPRIS ALT1 TSL 1 (best) BASIC4.97□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 46.1 ms