Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 FERMT1-201ENST00000217289 5151 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 DCUN1D3-201ENST00000324344 6162 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 BIRC7-201ENST00000217169 1368 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 PIK3CG-201ENST00000359195 5377 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 HMGN1-204ENST00000380749 1383 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 CDC25B-203ENST00000344256 3071 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 CGGBP1-201ENST00000309534 4495 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 AKAP8P1-201ENST00000434743 1349 ntBASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 PPM1F-201ENST00000263212 5143 ntAPPRIS P2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 GLIDR-204ENST00000638724 1765 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 TRMT2B-201ENST00000372935 2921 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 PLIN1-202ENST00000430628 2900 ntAPPRIS P1 TSL 5 BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 THAP3-202ENST00000307896 1046 ntAPPRIS ALT2 TSL 2 BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 EXOSC4-201ENST00000316052 887 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 C21orf2-201ENST00000325223 1283 ntAPPRIS ALT2 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 CRADD-201ENST00000332896 1169 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 WWOX-201ENST00000355860 710 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 FAM19A5-204ENST00000406880 833 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 AL049869.3-201ENST00000554918 558 ntTSL 3 BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 NFATC3-222ENST00000575270 3824 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 EXT2-210ENST00000533608 3136 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 AC092384.3-202ENST00000564646 2873 ntBASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 CYP21A2-221ENST00000418967 2182 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 BMP1-201ENST00000306349 2626 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 C2orf54-202ENST00000388934 1911 ntAPPRIS P4 TSL 2 BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 SLC2A9-201ENST00000264784 1850 ntAPPRIS P4 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 RNLS-201ENST00000331772 1447 ntAPPRIS P1 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 NTNG1-203ENST00000370066 1443 ntTSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 CD14-202ENST00000401743 1648 ntAPPRIS P1 TSL 3 BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 TRMT2A-202ENST00000403707 2928 ntAPPRIS P3 TSL 1 (best) BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 CLPTM1L-216ENST00000630539 2032 ntTSL 5 BASIC13.97□□□□□ -0.17
CCDC54Q8NEL0 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 SIRT6-214ENST00000601488 1361 ntTSL 3 BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 GULP1-209ENST00000410051 1595 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 ANKH-201ENST00000284268 8203 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 AC100861.1-202ENST00000500853 1970 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 ZXDC-202ENST00000389709 3405 ntAPPRIS P4 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 PHKG2-201ENST00000328273 1536 ntAPPRIS ALT1 TSL 5 BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 MYLK-203ENST00000359169 7585 ntAPPRIS P3 TSL 5 BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 WDR1-202ENST00000382451 2722 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 MTA1-202ENST00000405646 2709 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 AC092718.8-201ENST00000640345 2892 ntAPPRIS P1 TSL 5 BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 FBP1-201ENST00000375326 1462 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 TNNC2-202ENST00000372557 780 ntTSL 3 BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 PDLIM4-202ENST00000379018 1006 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 CDKN2A-209ENST00000498628 926 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 MAL2-202ENST00000531508 892 ntTSL 3 BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 PDPK2P-202ENST00000562415 1191 ntBASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 RARRES2P8-201ENST00000566335 367 ntBASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 MARVELD3-206ENST00000567566 850 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 AP000894.3-201ENST00000582554 351 ntTSL 5 BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 C19orf33-202ENST00000588605 520 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 AC040963.1-202ENST00000589729 644 ntTSL 5 BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 CLEC11A-203ENST00000617718 1128 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 TUBB-206ENST00000330914 2632 ntTSL 2 BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC13.96□□□□□ -0.17
CCDC54Q8NEL0 ACOXL-201ENST00000340561 2188 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
CCDC54Q8NEL0 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
CCDC54Q8NEL0 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC13.96□□□□□ -0.18
CCDC54Q8NEL0 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
CCDC54Q8NEL0 FBLN1-202ENST00000327858 2896 ntAPPRIS P1 TSL 1 (best) BASIC13.96□□□□□ -0.18
CCDC54Q8NEL0 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC13.96□□□□□ -0.18
CCDC54Q8NEL0 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC13.96□□□□□ -0.18
CCDC54Q8NEL0 TMTC2-203ENST00000548305 2682 ntTSL 1 (best) BASIC13.96□□□□□ -0.18
CCDC54Q8NEL0 SERAC1-201ENST00000367101 1907 ntTSL 5 BASIC13.96□□□□□ -0.18
CCDC54Q8NEL0 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC13.96□□□□□ -0.18
CCDC54Q8NEL0 POLR1D-212ENST00000630983 1931 ntTSL 5 BASIC13.96□□□□□ -0.18
CCDC54Q8NEL0 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC13.95□□□□□ -0.18
CCDC54Q8NEL0 UBE4B-201ENST00000253251 4772 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC54Q8NEL0 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC13.95□□□□□ -0.18
CCDC54Q8NEL0 SLC25A45-214ENST00000534028 2432 ntTSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC54Q8NEL0 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC54Q8NEL0 P4HA2-201ENST00000166534 2230 ntAPPRIS P3 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC54Q8NEL0 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC13.95□□□□□ -0.18
CCDC54Q8NEL0 HMGCLL1-202ENST00000308161 1314 ntTSL 2 BASIC13.95□□□□□ -0.18
CCDC54Q8NEL0 HLA-A-201ENST00000376802 1334 ntBASIC13.95□□□□□ -0.18
CCDC54Q8NEL0 AC006058.4-201ENST00000624016 1670 ntBASIC13.95□□□□□ -0.18
CCDC54Q8NEL0 PCDHB14-201ENST00000239449 4828 ntAPPRIS P1 BASIC13.95□□□□□ -0.18
CCDC54Q8NEL0 TPCN1-214ENST00000550785 5345 ntTSL 2 BASIC13.95□□□□□ -0.18
Retrieved 100 of 98,524 protein–RNA pairs in 34.7 ms