Protein–RNA interactions for Protein: Q8IXF0

NPAS3, Neuronal PAS domain-containing protein 3, humanhuman

Predictions only

Length 933 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPAS3Q8IXF0 SLC39A13-201ENST00000354884 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 PRPF31-203ENST00000419967 2269 ntTSL 5 BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 PPP2R2B-206ENST00000453001 2569 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 KCTD20-202ENST00000373731 5619 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 HCN1-201ENST00000303230 9885 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 CACNA1A-214ENST00000614285 8410 ntAPPRIS ALT2 TSL 5 BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 CD244-203ENST00000368034 2463 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 MAPT-205ENST00000351559 5811 ntAPPRIS ALT2 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 FERMT2-203ENST00000395631 3369 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 RABEPK-201ENST00000259460 1313 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 NSUN5-202ENST00000310326 1602 ntAPPRIS ALT2 TSL 2 BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 MIER1-209ENST00000401042 1648 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 ADAM10-205ENST00000461408 1932 ntTSL 2 BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 SLC39A1-202ENST00000356205 2084 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 PYCR3-201ENST00000220966 2678 ntAPPRIS P2 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 TJP2-202ENST00000377245 4611 ntAPPRIS P4 TSL 1 (best) BASIC16.41■□□□□ 0.22
NPAS3Q8IXF0 ABCG5-201ENST00000260645 2740 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 SPATS2L-202ENST00000360760 2119 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 BAIAP2-205ENST00000435091 2129 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 EIF4E1B-203ENST00000504597 1676 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 AL133338.1-201ENST00000565695 1517 ntBASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 PACS2-202ENST00000430725 2944 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 SPTBN4-212ENST00000598249 8070 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 AHRR-203ENST00000505113 2173 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 TTC13-202ENST00000366662 3112 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 LETM2-202ENST00000379957 1873 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 MSTO2P-201ENST00000314835 1709 ntBASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 ZYG11A-202ENST00000371532 3942 ntTSL 5 BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 HAUS4P1-201ENST00000406739 1145 ntBASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 BAATP1-201ENST00000412284 1225 ntBASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 DUSP13-205ENST00000464872 684 ntTSL 3 BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 POLR2F-208ENST00000470701 584 ntTSL 3 BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 AC004803.1-204ENST00000543290 512 ntTSL 4 BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 RPL36-203ENST00000577222 874 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 MIR6787-201ENST00000616675 61 ntBASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 SNX12-206ENST00000622259 661 ntTSL 5 BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 FP565260.6-205ENST00000624120 898 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 USE1-206ENST00000595101 1776 ntTSL 2 BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 SPG7-201ENST00000268704 3076 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 SRRM2-201ENST00000301740 9353 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 HSFX1-201ENST00000370416 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 FBXO18-203ENST00000397269 3640 ntTSL 5 BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 UCKL1-201ENST00000354216 1837 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 AL118508.1-201ENST00000613502 2345 ntBASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 APBA2-207ENST00000558402 4031 ntAPPRIS P1 TSL 5 BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 VEGFA-205ENST00000372067 3535 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 KIFC3-203ENST00000445690 3379 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 ADAMTSL5-201ENST00000330475 2857 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 CDPF1-204ENST00000404744 1541 ntTSL 3 BASIC16.4■□□□□ 0.22
NPAS3Q8IXF0 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
NPAS3Q8IXF0 ELN-207ENST00000380562 2240 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.22
NPAS3Q8IXF0 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.39■□□□□ 0.22
NPAS3Q8IXF0 FP565260.3-204ENST00000623795 2238 ntTSL 2 BASIC16.39■□□□□ 0.22
NPAS3Q8IXF0 AC112229.1-202ENST00000490013 2918 ntTSL 2 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 PITPNA-202ENST00000539476 3612 ntAPPRIS ALT1 TSL 5 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 LINC00094-205ENST00000603928 5722 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 ZNF133-205ENST00000401790 2642 ntAPPRIS ALT2 TSL 2 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 ZNF133-206ENST00000402618 2622 ntTSL 2 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 MREG-205ENST00000620139 2618 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 PLSCR4-204ENST00000446574 1442 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 TMEM220-202ENST00000455996 1402 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 CENPT-208ENST00000562787 2345 ntAPPRIS P2 TSL 2 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 C1orf115-201ENST00000294889 3413 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 ASPH-211ENST00000518068 2744 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 UEVLD-201ENST00000300038 995 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 PRKN-201ENST00000338468 1276 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 PRKN-203ENST00000366894 1157 ntTSL 5 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 BRWD1P1-201ENST00000401091 371 ntBASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 P3H2-AS1-201ENST00000412203 730 ntTSL 5 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 TMEM147-AS1-201ENST00000444728 487 ntTSL 3 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 AC012441.1-201ENST00000446669 685 ntBASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 METTL6-204ENST00000450816 1221 ntTSL 2 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 HYAL1-208ENST00000457214 1084 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 FTH1P14-201ENST00000482930 551 ntBASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 AC020659.2-202ENST00000512295 513 ntTSL 2 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 RPL23AP53-203ENST00000606975 736 ntTSL 2 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 C18orf21-207ENST00000610527 1059 ntTSL 2 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 C18orf21-208ENST00000618334 856 ntTSL 3 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 SCUBE2-202ENST00000450649 2912 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 PNMA6E-202ENST00000633844 2596 ntTSL 3 BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
NPAS3Q8IXF0 ST6GALNAC6-202ENST00000373141 2424 ntAPPRIS ALT1 TSL 2 BASIC16.39■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 59.9 ms