Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 USP7-201ENST00000344836 5412 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX4Q06945 PIGT-201ENST00000279035 1880 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX4Q06945 CACFD1-201ENST00000291722 2688 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX4Q06945 METTL17-202ENST00000382985 1586 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX4Q06945 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX4Q06945 MMP15-201ENST00000219271 4250 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX4Q06945 SLC39A1-203ENST00000368621 2398 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SOX4Q06945 DNAAF1-201ENST00000378553 2379 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX4Q06945 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC16.91■□□□□ 0.3
SOX4Q06945 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
SOX4Q06945 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC16.91■□□□□ 0.3
SOX4Q06945 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
SOX4Q06945 OR8S1-201ENST00000310194 1080 ntBASIC16.91■□□□□ 0.3
SOX4Q06945 FANK1-204ENST00000368695 1296 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SOX4Q06945 HOPX-203ENST00000381255 1164 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SOX4Q06945 TEN1-201ENST00000397640 994 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX4Q06945 AC079776.1-201ENST00000401540 1152 ntBASIC16.91■□□□□ 0.3
SOX4Q06945 AL442647.2-201ENST00000429864 857 ntBASIC16.91■□□□□ 0.3
SOX4Q06945 TMEM14B-212ENST00000475942 992 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX4Q06945 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC16.91■□□□□ 0.3
SOX4Q06945 FUZ-207ENST00000526575 482 ntTSL 4 BASIC16.91■□□□□ 0.3
SOX4Q06945 AC008750.2-202ENST00000532688 729 ntTSL 3 BASIC16.91■□□□□ 0.3
SOX4Q06945 HOPX-210ENST00000553379 1001 ntAPPRIS P1 TSL 2 BASIC16.91■□□□□ 0.3
SOX4Q06945 HOPX-212ENST00000555760 1139 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
SOX4Q06945 HOPX-213ENST00000556376 1064 ntAPPRIS P1 TSL 3 BASIC16.91■□□□□ 0.3
SOX4Q06945 AL359711.2-201ENST00000563105 872 ntBASIC16.91■□□□□ 0.3
SOX4Q06945 HAUS2-207ENST00000568846 709 ntTSL 3 BASIC16.91■□□□□ 0.3
SOX4Q06945 AC111170.2-201ENST00000585369 768 ntTSL 3 BASIC16.91■□□□□ 0.3
SOX4Q06945 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC16.91■□□□□ 0.3
SOX4Q06945 AC005253.2-201ENST00000593791 432 ntTSL 3 BASIC16.91■□□□□ 0.3
SOX4Q06945 PCDHGC3-204ENST00000617222 731 ntTSL 3 BASIC16.91■□□□□ 0.3
SOX4Q06945 ASTN2-205ENST00000361209 4622 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX4Q06945 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SOX4Q06945 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
SOX4Q06945 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX4Q06945 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC16.91■□□□□ 0.3
SOX4Q06945 PHRF1-202ENST00000413872 5224 ntAPPRIS ALT2 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX4Q06945 TGIF1-201ENST00000330513 1980 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
SOX4Q06945 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX4Q06945 CANT1-211ENST00000591773 1669 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
SOX4Q06945 MRC2-201ENST00000303375 5988 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX4Q06945 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SOX4Q06945 AC012485.3-201ENST00000637634 2424 ntTSL 5 BASIC16.9■□□□□ 0.3
SOX4Q06945 SENP5-201ENST00000323460 6308 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX4Q06945 DZIP1L-204ENST00000469243 2107 ntAPPRIS ALT2 TSL 2 BASIC16.9■□□□□ 0.3
SOX4Q06945 PRDM8-201ENST00000339711 4095 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX4Q06945 INTS11-203ENST00000419704 1798 ntTSL 2 BASIC16.9■□□□□ 0.3
SOX4Q06945 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX4Q06945 PPP1R27-202ENST00000570394 1443 ntTSL 2 BASIC16.9■□□□□ 0.3
SOX4Q06945 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX4Q06945 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX4Q06945 ETFB-201ENST00000309244 900 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX4Q06945 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC16.9■□□□□ 0.3
SOX4Q06945 TTTY23B-201ENST00000442790 549 ntBASIC16.9■□□□□ 0.3
SOX4Q06945 HOXB3-204ENST00000465120 943 ntTSL 3 BASIC16.9■□□□□ 0.3
SOX4Q06945 AC021491.2-201ENST00000513017 607 ntTSL 3 BASIC16.9■□□□□ 0.3
SOX4Q06945 GPX4-206ENST00000588919 803 ntTSL 2 BASIC16.9■□□□□ 0.3
SOX4Q06945 AC005785.1-202ENST00000597164 237 ntTSL 3 BASIC16.9■□□□□ 0.3
SOX4Q06945 AC000095.1-201ENST00000603208 874 ntBASIC16.9■□□□□ 0.3
SOX4Q06945 CCL4L2-214ENST00000617416 1258 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SOX4Q06945 AC247036.4-201ENST00000632099 353 ntAPPRIS P1 BASIC16.9■□□□□ 0.3
SOX4Q06945 SRF-201ENST00000265354 4202 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX4Q06945 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SOX4Q06945 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC16.9■□□□□ 0.3
SOX4Q06945 SARS2-201ENST00000221431 2057 ntAPPRIS P2 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX4Q06945 NPNT-201ENST00000305572 3003 ntTSL 1 (best) BASIC16.9■□□□□ 0.3
SOX4Q06945 NAP1L4-201ENST00000380542 2511 ntAPPRIS P1 TSL 1 (best) BASIC16.9■□□□□ 0.3
SOX4Q06945 LINC01168-201ENST00000461291 5254 ntTSL 2 BASIC16.9■□□□□ 0.3
SOX4Q06945 ATP6V1C2-201ENST00000272238 1565 ntTSL 5 BASIC16.89■□□□□ 0.3
SOX4Q06945 SPATA21-205ENST00000540400 1773 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.3
SOX4Q06945 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.3
SOX4Q06945 BRINP1-202ENST00000373964 1641 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SOX4Q06945 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX4Q06945 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX4Q06945 ADGRG2-208ENST00000379873 4698 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SOX4Q06945 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SOX4Q06945 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX4Q06945 ELK1-203ENST00000376983 2258 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX4Q06945 BANP-204ENST00000393208 2283 ntTSL 2 BASIC16.89■□□□□ 0.29
SOX4Q06945 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC16.89■□□□□ 0.29
SOX4Q06945 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX4Q06945 TRIM9-202ENST00000338969 3312 ntTSL 2 BASIC16.89■□□□□ 0.29
SOX4Q06945 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SOX4Q06945 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX4Q06945 RAB38-201ENST00000243662 1465 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX4Q06945 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SOX4Q06945 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX4Q06945 TNNI1-203ENST00000367312 1100 ntAPPRIS P2 TSL 5 BASIC16.89■□□□□ 0.29
SOX4Q06945 AC016683.1-202ENST00000438409 583 ntTSL 4 BASIC16.89■□□□□ 0.29
SOX4Q06945 KRT18P43-201ENST00000469825 1281 ntBASIC16.89■□□□□ 0.29
SOX4Q06945 HILS1-202ENST00000545329 423 ntBASIC16.89■□□□□ 0.29
SOX4Q06945 MRPL52-216ENST00000557221 922 ntTSL 2 BASIC16.89■□□□□ 0.29
SOX4Q06945 AC124283.3-201ENST00000570869 594 ntBASIC16.89■□□□□ 0.29
SOX4Q06945 AL049840.4-201ENST00000602422 811 ntBASIC16.89■□□□□ 0.29
SOX4Q06945 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.89■□□□□ 0.29
SOX4Q06945 SLC9A3-AS1-206ENST00000607005 435 ntTSL 3 BASIC16.89■□□□□ 0.29
SOX4Q06945 NDUFB1-207ENST00000617122 417 ntTSL 1 (best) BASIC16.89■□□□□ 0.29
SOX4Q06945 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC16.89■□□□□ 0.29
SOX4Q06945 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
SOX4Q06945 SERPINA4-202ENST00000555095 1987 ntAPPRIS P1 TSL 1 (best) BASIC16.89■□□□□ 0.29
Retrieved 100 of 98,524 protein–RNA pairs in 60.1 ms