Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC15.14■□□□□ 0.01
LIM2P55344 AK5-203ENST00000354567 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 TAGLN3-202ENST00000393917 1488 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
LIM2P55344 CRTC2-202ENST00000368630 1635 ntTSL 2 BASIC15.14■□□□□ 0.01
LIM2P55344 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC15.14■□□□□ 0.01
LIM2P55344 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 LRRC3-201ENST00000291592 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
LIM2P55344 FOLH1-201ENST00000256999 2635 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIM2P55344 STC2-201ENST00000265087 5353 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIM2P55344 HOXD3-202ENST00000410016 2384 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
LIM2P55344 KRT8P12-202ENST00000472924 1397 ntBASIC15.13■□□□□ 0.01
LIM2P55344 IMPDH1P4-201ENST00000445028 1534 ntBASIC15.13■□□□□ 0.01
LIM2P55344 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LIM2P55344 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
LIM2P55344 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIM2P55344 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIM2P55344 NOTO-201ENST00000398468 2749 ntAPPRIS P1 TSL 2 BASIC15.13■□□□□ 0.01
LIM2P55344 HSPA12B-201ENST00000254963 3151 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIM2P55344 GLS2-201ENST00000311966 2623 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIM2P55344 S100A14-204ENST00000368702 1218 ntAPPRIS P1 TSL 3 BASIC15.13■□□□□ 0.01
LIM2P55344 CKAP4-201ENST00000378026 3093 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIM2P55344 CASK-202ENST00000378158 3848 ntTSL 5 BASIC15.13■□□□□ 0.01
LIM2P55344 CLTA-203ENST00000396603 1090 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LIM2P55344 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC15.13■□□□□ 0.01
LIM2P55344 ELP6-209ENST00000446787 894 ntTSL 3 BASIC15.13■□□□□ 0.01
LIM2P55344 HLA-V-204ENST00000476601 1289 ntBASIC15.13■□□□□ 0.01
LIM2P55344 S100A14-206ENST00000476873 1025 ntAPPRIS P1 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIM2P55344 SLC22A23-210ENST00000490273 2043 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LIM2P55344 EHF-205ENST00000527935 557 ntTSL 2 BASIC15.13■□□□□ 0.01
LIM2P55344 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.13■□□□□ 0.01
LIM2P55344 AC106028.4-201ENST00000614509 607 ntBASIC15.13■□□□□ 0.01
LIM2P55344 PPP1R26-202ENST00000401470 4769 ntAPPRIS P1 TSL 5 BASIC15.13■□□□□ 0.01
LIM2P55344 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LIM2P55344 AC013268.4-201ENST00000637413 2228 ntBASIC15.13■□□□□ 0.01
LIM2P55344 ASAH1-240ENST00000636997 1774 ntTSL 5 BASIC15.13■□□□□ 0.01
LIM2P55344 EPS8L2-231ENST00000614442 3188 ntAPPRIS ALT2 TSL 5 BASIC15.13■□□□□ 0.01
LIM2P55344 SLC3A2-208ENST00000536981 1486 ntTSL 2 BASIC15.13■□□□□ 0.01
LIM2P55344 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC15.13■□□□□ 0.01
LIM2P55344 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC15.13■□□□□ 0.01
LIM2P55344 SREBF1-201ENST00000261646 4178 ntAPPRIS P3 TSL 1 (best) BASIC15.13■□□□□ 0.01
LIM2P55344 PIP4K2C-207ENST00000550465 1532 ntTSL 2 BASIC15.12■□□□□ 0.01
LIM2P55344 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIM2P55344 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC15.12■□□□□ 0.01
LIM2P55344 FO538757.1-201ENST00000623083 1397 ntBASIC15.12■□□□□ 0.01
LIM2P55344 SNAPC1-201ENST00000216294 2656 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIM2P55344 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC15.12■□□□□ 0.01
LIM2P55344 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.12■□□□□ 0.01
LIM2P55344 LRRFIP1P1-201ENST00000498774 2246 ntBASIC15.12■□□□□ 0.01
LIM2P55344 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIM2P55344 WASHC2C-204ENST00000374362 4623 ntAPPRIS P3 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIM2P55344 LINC01270-201ENST00000371639 2281 ntTSL 2 BASIC15.12■□□□□ 0.01
LIM2P55344 NSUN5-203ENST00000428206 2269 ntAPPRIS ALT2 TSL 2 BASIC15.12■□□□□ 0.01
LIM2P55344 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LIM2P55344 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LIM2P55344 RPL37AP1-201ENST00000412502 279 ntBASIC15.12■□□□□ 0.01
LIM2P55344 AL080243.2-201ENST00000418783 582 ntBASIC15.12■□□□□ 0.01
LIM2P55344 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC15.12■□□□□ 0.01
LIM2P55344 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LIM2P55344 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LIM2P55344 AC100810.1-201ENST00000518822 978 ntTSL 2 BASIC15.12■□□□□ 0.01
LIM2P55344 DUX4L27-201ENST00000554796 1261 ntBASIC15.12■□□□□ 0.01
LIM2P55344 PRR29-209ENST00000582540 967 ntTSL 2 BASIC15.12■□□□□ 0.01
LIM2P55344 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LIM2P55344 AL138828.2-201ENST00000615812 383 ntBASIC15.12■□□□□ 0.01
LIM2P55344 SELENOH-206ENST00000622257 1291 ntAPPRIS ALT1 TSL 5 BASIC15.12■□□□□ 0.01
LIM2P55344 AC073592.8-201ENST00000624126 511 ntBASIC15.12■□□□□ 0.01
LIM2P55344 ORAOV1-201ENST00000279147 2478 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIM2P55344 AMT-233ENST00000636522 1620 ntTSL 2 BASIC15.12■□□□□ 0.01
LIM2P55344 ANKRD24-206ENST00000600132 4026 ntAPPRIS P2 TSL 5 BASIC15.12■□□□□ 0.01
LIM2P55344 NPL-204ENST00000367554 3027 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LIM2P55344 ITGA7-202ENST00000347027 4084 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
LIM2P55344 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC15.12■□□□□ 0.01
LIM2P55344 JPH4-202ENST00000397118 4386 ntAPPRIS P2 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIM2P55344 CCR7-203ENST00000579344 1874 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LIM2P55344 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
LIM2P55344 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC15.12■□□□□ 0.01
LIM2P55344 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LIM2P55344 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC15.12■□□□□ 0.01
LIM2P55344 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
LIM2P55344 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC15.12■□□□□ 0.01
LIM2P55344 BEND5-201ENST00000371833 1716 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
LIM2P55344 WDR61-201ENST00000267973 1387 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIM2P55344 ULK4-203ENST00000420927 1904 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LIM2P55344 SNX1-213ENST00000561026 1374 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LIM2P55344 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIM2P55344 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LIM2P55344 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.11■□□□□ 0.01
LIM2P55344 P3H1-202ENST00000296388 2585 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIM2P55344 DGAT1-206ENST00000528718 3711 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIM2P55344 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.11■□□□□ 0.01
LIM2P55344 BMP3-201ENST00000282701 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
LIM2P55344 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
LIM2P55344 PDSS2-201ENST00000369031 1236 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
LIM2P55344 HIST2H3PS2-201ENST00000392948 411 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
LIM2P55344 MIR943-201ENST00000401286 94 ntBASIC15.11■□□□□ 0.01
LIM2P55344 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.11■□□□□ 0.01
LIM2P55344 TREML5P-201ENST00000421694 576 ntBASIC15.11■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 32 ms